Non-Coding RNA Search

Ss1.1-rche30_k9.5

Sequence:


               
               TGTTTCCCATGGTTTTTCTGGCTCCATAGCTAGCTTACTATTATTAGCAATTATCTGGGT
GATTTTACTTGAATTCTCACAGTTGTGTGTGTGTATGTGTGTGTGTATGAGTGCACACTC
GTGCGTGCACATATACATGGGCACTTGTGTTTTTTTTCCTCAAATACTCATTTGTTCTTT
TGAGTACTTCTTGGCATTTTTAAAGATTTGTTGACGATTTAATTCCCAGCAAATATTACT
TGGGAATTTTTAAGACCAGGCCTATGCACTAACTCAGGTACTGTTCCCTGTTAGCCAGGA
GAATAAATACTTGATAATAATTTGTTTTTCTCTTTTGAATGAAGATAAATTTTTTCAGCA
ATTCTTCAAAAAGCTCTGATGTGAGTCTGTTAGCCTGAGGTAAGCTGCTTTACTCCCTGC
TGTTGACCTCTGCTCTGGAAGATAATAGAGTGTAAATCTTTTCATATTACCATATTACCA
CCAGTGTTTATGAAGAGTTTAGTTTAAGTGCTTATAGTTTTGTTTTTTTCTGAAGCTGTT
TCAGGAGGCTTAAGACTACTGCTGGTGCTGTTAGCCAAGCAACCTGCTAGAATTAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTCCCATGGTTTTTCTGGCTCCATAGCTAGCTTACTATTATTAGCAATTATCTGGGT
GATTTTACTTGAATTCTCACAGTTGTGTGTGTGTATGTGTGTGTGTATGAGTGCACACTC
GTGCGTGCACATATACATGGGCACTTGTGTTTTTTTTCCTCAAATACTCATTTGTTCTTT
TGAGTACTTCTTGGCATTTTTAAAGATTTGTTGACGATTTAATTCCCAGCAAATATTACT
TGGGAATTTTTAAGACCAGGCCTATGCACTAACTCAGGTACTGTTCCCTGTTAGCCAGGA
GAATAAATACTTGATAATAATTTGTTTTTCTCTTTTGAATGAAGATAAATTTTTTCAGCA
ATTCTTCAAAAAGCTCTGATGTGAGTCTGTTAGCCTGAGGTAAGCTGCTTTACTCCCTGC
TGTTGACCTCTGCTCTGGAAGATAATAGAGTGTAAATCTTTTCATATTACCATATTACCA
CCAGTGTTTATGAAGAGTTTAGTTTAAGTGCTTATAGTTTTGTTTTTTTCTGAAGCTGTT
TCAGGAGGCTTAAGACTACTGCTGGTGCTGTTAGCCAAGCAACCTGCTAGAATTAAGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-388, - strand, RNAz p=0.842006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-388, - strand, RNAz p=0.842006

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               342-411, + strand, RNAmicro p=0.904677

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               342-411, + strand, RNAmicro p=0.904677

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               114-600, gnl|bosTau2|chr7 (53004151-53003674)
               

               
               114-600, gnl|Hg17|chr5 (79772228-79772735)
               

               
               114-600, gnl|Mm7|chr13 (89624096-89623608)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-600, gnl|bosTau2|chr7 (53004151-53003674)
               

               
               114-600, gnl|Hg17|chr5 (79772228-79772735)
               

               
               114-600, gnl|Mm7|chr13 (89624096-89623608)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lin (0.145603)
               

               
               che (0.136314)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               spc (0.113366)

	114-600, gnl\|bosTau2\|chr7 (53004151-53003674)
	114-600, gnl\|Hg17\|chr5 (79772228-79772735)
	114-600, gnl\|Mm7\|chr13 (89624096-89623608)