Non-Coding RNA Search

Ss1.1-rche32_a17.5

Sequence:


               
               GTTTCTTTGAACGTTGCCACACATGTCGTGTTGTAGTACCCATGGTGTCGTCATTCTGTG
ACTCGCGGAAATACCTTGACCAAAAGTGCGATATTCGTTTGTGTCCCTTGGTTTCTGACC
ATGGCAGACCTGCCTCACGCCGTCCCCCATGGTGGCTGTGCACTTGCTGGGAGCCCTGAG
GCCTCCCTCACCCCAGCCCTCCCGTCAGTTCTTCCCGTGGGGGGCCCCGGGGGCGAGGAT
CCAGCGCCCTTTGACCCGGAGTAGCAGAGCCCTCCTTTGGGCTCTGACCTCAGAGCTTGG
AACTGGACTTGCTCTCTGCACGCTTGCGTCTTAGGGAGCAGTCAGGGAGCGCAAAGGGCC
AGAGACCCCTCACTTTTCCCCAGGTGACTTTCGCAGTGTGGCAGGTGGTCCGCAGAAGCG
GGAGGTGCCCATGAGGAAAGCTCCATCCACAGAAGCCCCCTTCGGCCCGTGGCTCCGGGG
CCCCTTCAGAGCTGAGGTTCTCTCTGCTCCACAGCTTGACTGCTTACTGCGTGGCTCTGG
GGTGGTGGCTTTTTGAAAGTGACTGTCGACTGTGCCAAATGTCTTTTGAGCCTATACCAT
CCTCCTGCCCAGATGGCATAACTTCTCCGGGATTCTCACGTTGCCCTCACCTCCCGTGAA
GAGTAGGGTAGAAGAGTGTGCCCAGGGTGTGTGCTGACGACACGCCGTGTCTACACACCA
GCCTGAACGTGCTTGTGGGCACCTCAGCAGTCCGGCCCTTGCCCAGGATGTTTACAGCTA
TAAGATGTTAGAGGAACTTGACCTGCGTCCCATCAGAAAGATTGCAGGCCTCCATCCTGT
CATCTTTCAAGAAGAAAAAAGATTTGAGTGTGTCAAGGAAAAGCTGCTCTGACCGAGGAG
GACAGAGGATGAGAAGCCAGATGTCCTTTGGCCACTTTGAATAAGTAACACCCGCCTGCG
AAGAAGGGAAGCCATGTCACCTGGGGCCTCGGGCCCCATCAGGTTTGCTTTCCTGGGACT
TGTTGATAATCAGCCTCTGGTCCCAAGCCAGCGAGGAGCGCAGAGGGCTGCGGGGCAGCT
GTGATCCAGGCTACATGATGCGTAGTTACTTTCCTCGAGCTTCTCAGGCCCACGGTGGAT
CCTGGGCAAAGACTGCTGAGCCCCTTGCTAATAAGCGTGCTGAGAAACTAGATGCTGGCT
TTGACCAAGCTCCCTCCTCCCGGCCTCCTTCAGCGCCCCAGGGAATTGGAAGGTGATTCT
TTTCTTAAGGTTTCTGGAAAAGTATCTTATCCACGCCCTTGATGAGCCAAGTTGGTGTCT
CTTCTTGAAAGCCTTCTCCCTCCAGGAGAGGCCGGCCGATACCTCCACGGAGAGGTCTGA
CCGGCAGCTTGGGGGTGTCATGTGACCAGGGACCCACACTCTCCGGTCGCCCAGTCCTGC
CACAAGGGGAGTGTCACTGCTCCTCCTCCTCTGCCCAGGTCGGAGGCCAGGCCCAGGGAG
CAGCCTGGCACCTCCTGAGTGATGACACAGTAGCACGCTTCCGTCTTTTCCTCAGAACCT
GCTCTTCTTTGCTGGCAGTGAGGCAGGGTCCAGCCTCCTCTAGGGCGACTTTGTTTCTGC
AGTTTCAGCTGATCTCAGGGGCGTCGGGGAGTGTAGAGGAGGAAGGGGCAGCGCTGCTGA
GCAGTAGCCTCACCCACACCCTCCAGCATGGCCTTTGATCCCGACCTTTGGGACCATGCC
TGTCACTTGTGGGTGCCCTTTGTTACCATGTGTGTGTTTGAATAAAGTCTAAAATGCTGT
GACCCTTTTTCTTTCCTCCTGTCAATAAAGACATAAAACAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTTTGAACGTTGCCACACATGTCGTGTTGTAGTACCCATGGTGTCGTCATTCTGTG
ACTCGCGGAAATACCTTGACCAAAAGTGCGATATTCGTTTGTGTCCCTTGGTTTCTGACC
ATGGCAGACCTGCCTCACGCCGTCCCCCATGGTGGCTGTGCACTTGCTGGGAGCCCTGAG
GCCTCCCTCACCCCAGCCCTCCCGTCAGTTCTTCCCGTGGGGGGCCCCGGGGGCGAGGAT
CCAGCGCCCTTTGACCCGGAGTAGCAGAGCCCTCCTTTGGGCTCTGACCTCAGAGCTTGG
AACTGGACTTGCTCTCTGCACGCTTGCGTCTTAGGGAGCAGTCAGGGAGCGCAAAGGGCC
AGAGACCCCTCACTTTTCCCCAGGTGACTTTCGCAGTGTGGCAGGTGGTCCGCAGAAGCG
GGAGGTGCCCATGAGGAAAGCTCCATCCACAGAAGCCCCCTTCGGCCCGTGGCTCCGGGG
CCCCTTCAGAGCTGAGGTTCTCTCTGCTCCACAGCTTGACTGCTTACTGCGTGGCTCTGG
GGTGGTGGCTTTTTGAAAGTGACTGTCGACTGTGCCAAATGTCTTTTGAGCCTATACCAT
CCTCCTGCCCAGATGGCATAACTTCTCCGGGATTCTCACGTTGCCCTCACCTCCCGTGAA
GAGTAGGGTAGAAGAGTGTGCCCAGGGTGTGTGCTGACGACACGCCGTGTCTACACACCA
GCCTGAACGTGCTTGTGGGCACCTCAGCAGTCCGGCCCTTGCCCAGGATGTTTACAGCTA
TAAGATGTTAGAGGAACTTGACCTGCGTCCCATCAGAAAGATTGCAGGCCTCCATCCTGT
CATCTTTCAAGAAGAAAAAAGATTTGAGTGTGTCAAGGAAAAGCTGCTCTGACCGAGGAG
GACAGAGGATGAGAAGCCAGATGTCCTTTGGCCACTTTGAATAAGTAACACCCGCCTGCG
AAGAAGGGAAGCCATGTCACCTGGGGCCTCGGGCCCCATCAGGTTTGCTTTCCTGGGACT
TGTTGATAATCAGCCTCTGGTCCCAAGCCAGCGAGGAGCGCAGAGGGCTGCGGGGCAGCT
GTGATCCAGGCTACATGATGCGTAGTTACTTTCCTCGAGCTTCTCAGGCCCACGGTGGAT
CCTGGGCAAAGACTGCTGAGCCCCTTGCTAATAAGCGTGCTGAGAAACTAGATGCTGGCT
TTGACCAAGCTCCCTCCTCCCGGCCTCCTTCAGCGCCCCAGGGAATTGGAAGGTGATTCT
TTTCTTAAGGTTTCTGGAAAAGTATCTTATCCACGCCCTTGATGAGCCAAGTTGGTGTCT
CTTCTTGAAAGCCTTCTCCCTCCAGGAGAGGCCGGCCGATACCTCCACGGAGAGGTCTGA
CCGGCAGCTTGGGGGTGTCATGTGACCAGGGACCCACACTCTCCGGTCGCCCAGTCCTGC
CACAAGGGGAGTGTCACTGCTCCTCCTCCTCTGCCCAGGTCGGAGGCCAGGCCCAGGGAG
CAGCCTGGCACCTCCTGAGTGATGACACAGTAGCACGCTTCCGTCTTTTCCTCAGAACCT
GCTCTTCTTTGCTGGCAGTGAGGCAGGGTCCAGCCTCCTCTAGGGCGACTTTGTTTCTGC
AGTTTCAGCTGATCTCAGGGGCGTCGGGGAGTGTAGAGGAGGAAGGGGCAGCGCTGCTGA
GCAGTAGCCTCACCCACACCCTCCAGCATGGCCTTTGATCCCGACCTTTGGGACCATGCC
TGTCACTTGTGGGTGCCCTTTGTTACCATGTGTGTGTTTGAATAAAGTCTAAAATGCTGT
GACCCTTTTTCTTTCCTCCTGTCAATAAAGACATAAAACAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1309-1427, - strand, RNAz p=0.662062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1309-1427, - strand, RNAz p=0.662062

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               288-1448, gnl|bosTau2|chr5 (46172350-46171200)
               

               
               288-1448, gnl|Hg17|chr17 (70571929-70573204)
               


               
               1583-1840, gnl|bosTau2|chr5 (46171187-46170921)
               

               
               1583-1840, gnl|Hg17|chr17 (70573309-70573561)
               

               
               1583-1840, gnl|Mm7|chr11 (115541854-115542105)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               288-1448, gnl|bosTau2|chr5 (46172350-46171200)
               

               
               288-1448, gnl|Hg17|chr17 (70571929-70573204)
               


               
               1583-1840, gnl|bosTau2|chr5 (46171187-46170921)
               

               
               1583-1840, gnl|Hg17|chr17 (70573309-70573561)
               

               
               1583-1840, gnl|Mm7|chr11 (115541854-115542105)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	288-1448, gnl\|bosTau2\|chr5 (46172350-46171200)
	288-1448, gnl\|Hg17\|chr17 (70571929-70573204)

	1583-1840, gnl\|bosTau2\|chr5 (46171187-46170921)
	1583-1840, gnl\|Hg17\|chr17 (70573309-70573561)
	1583-1840, gnl\|Mm7\|chr11 (115541854-115542105)

	fbs (0.350693)
	sin (0.349895)
	ece (0.229305)
	mas (0.210305)
	csp (0.161186)
	cli (0.152812)
	hyp (0.142837)
	che (0.136314)
	nmm (0.132802)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)