Non-Coding RNA Search

Ss1.1-rche32_e3.5

Sequence:


               
               GGGGGCCTGAGGGGAAGGGAAGGGGGGGGAGTCCCCACACTGGATCGGGGCGGGACTACG
CTGAGTCTGTTACAAGTGCCTTAATCCGAGCCAGCAGGGCCTCTGCTTGCCCGCTGCTGC
CCTACTGTAGGTAGGAAACTGCCCTGTGGCTGCTCTATGTCAAGAGGAAAGGGATTCCTC
TCAGACTTTTGGTTCCCCTTCAGTCAAAGCCAAAGATGACCGGCTGCCTCGTAGGCTTGT
GCCTGCAAGTAGGACCCGGCAGTGGCCATCAGATCCCCTGTGGGGATTTCACAGACCCCC
GAAGGAGGAAGGAGGGCTCGGCTTGACCACACAATTCCAGGCGGCTCTCCATCGTCTCTC
TCCATCGCTGCTACCAAGGAGTTGCTGAGCAGCGGCCTGGGAGGAGGAGCACAGAGCAGA
CGGCGGCGGCGGCGGCGGCGGCGGGCGGCAGCGGCAGCGGCGATGTGCCTCCCTCCCATT
TTCCTTCTCGCGCTCCTCCTTGGGAGCAGAGGCAGCCTGCCGCCTGAGCCCGCCCCACCA
GAGCCCCGGTGGAAGTGGGTGGCCGGAAGTGGGTGGCCTCCTCTGCCAGGCCCAGCACAT
GATGTGAAGAGGAAAGAAATGCCCAGTTCTTACTGTTGAGGTTGGATGTGGAATCACAGC
TGCAGTGATATATATTTTTATCAGCGCTTGGTTGGTTTTAAATAAAGTGCACGCTATTTT
ATTATCTCGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGCCTGAGGGGAAGGGAAGGGGGGGGAGTCCCCACACTGGATCGGGGCGGGACTACG
CTGAGTCTGTTACAAGTGCCTTAATCCGAGCCAGCAGGGCCTCTGCTTGCCCGCTGCTGC
CCTACTGTAGGTAGGAAACTGCCCTGTGGCTGCTCTATGTCAAGAGGAAAGGGATTCCTC
TCAGACTTTTGGTTCCCCTTCAGTCAAAGCCAAAGATGACCGGCTGCCTCGTAGGCTTGT
GCCTGCAAGTAGGACCCGGCAGTGGCCATCAGATCCCCTGTGGGGATTTCACAGACCCCC
GAAGGAGGAAGGAGGGCTCGGCTTGACCACACAATTCCAGGCGGCTCTCCATCGTCTCTC
TCCATCGCTGCTACCAAGGAGTTGCTGAGCAGCGGCCTGGGAGGAGGAGCACAGAGCAGA
CGGCGGCGGCGGCGGCGGCGGCGGGCGGCAGCGGCAGCGGCGATGTGCCTCCCTCCCATT
TTCCTTCTCGCGCTCCTCCTTGGGAGCAGAGGCAGCCTGCCGCCTGAGCCCGCCCCACCA
GAGCCCCGGTGGAAGTGGGTGGCCGGAAGTGGGTGGCCTCCTCTGCCAGGCCCAGCACAT
GATGTGAAGAGGAAAGAAATGCCCAGTTCTTACTGTTGAGGTTGGATGTGGAATCACAGC
TGCAGTGATATATATTTTTATCAGCGCTTGGTTGGTTTTAAATAAAGTGCACGCTATTTT
ATTATCTCGTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-341, + strand, RNAz p=0.988496

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-341, + strand, RNAz p=0.988496

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_024092, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_024092, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               2-421, gnl|bosTau2|chr29 (28318962-28318552)
               

               
               2-421, gnl|Hg17|chr11 (60446751-60447219)
               

               
               2-421, gnl|Mm7|chr19 (10551413-10551056)
               


               
               565-732, gnl|bosTau2|chr29 (28318459-28318286)
               

               
               565-732, gnl|canFam2|chr18 (58407467-58406258)
               

               
               565-732, gnl|dasNov1|scaffold_30355 (15843-14569)
               

               
               565-732, gnl|echTel1|scaffold_287861 (1411-323)
               

               
               565-732, gnl|hg17|chr11 (60447065-60448301)
               

               
               565-732, gnl|Hg17|chr11 (60447304-60447468)
               

               
               565-732, gnl|loxAfr1|scaffold_60643 (4870-6139)
               

               
               565-732, gnl|mm7|chr19 (10551167-10550130)
               

               
               565-732, gnl|Mm7|chr19 (10550959-10550809)
               

               
               565-732, gnl|oryCun1|scaffold_193644 (47449-46415)
               

               
               565-732, gnl|panTro1|chr9 (61381767-61383003)
               

               
               565-732, gnl|rheMac2|chr14 (13194371-13193165)
               

               
               565-732, gnl|rn3|chr1 (213527382-213526349)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-421, gnl|bosTau2|chr29 (28318962-28318552)
               

               
               2-421, gnl|Hg17|chr11 (60446751-60447219)
               

               
               2-421, gnl|Mm7|chr19 (10551413-10551056)
               


               
               565-732, gnl|bosTau2|chr29 (28318459-28318286)
               

               
               565-732, gnl|canFam2|chr18 (58407467-58406258)
               

               
               565-732, gnl|dasNov1|scaffold_30355 (15843-14569)
               

               
               565-732, gnl|echTel1|scaffold_287861 (1411-323)
               

               
               565-732, gnl|hg17|chr11 (60447065-60448301)
               

               
               565-732, gnl|Hg17|chr11 (60447304-60447468)
               

               
               565-732, gnl|loxAfr1|scaffold_60643 (4870-6139)
               

               
               565-732, gnl|mm7|chr19 (10551167-10550130)
               

               
               565-732, gnl|Mm7|chr19 (10550959-10550809)
               

               
               565-732, gnl|oryCun1|scaffold_193644 (47449-46415)
               

               
               565-732, gnl|panTro1|chr9 (61381767-61383003)
               

               
               565-732, gnl|rheMac2|chr14 (13194371-13193165)
               

               
               565-732, gnl|rn3|chr1 (213527382-213526349)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               cov (0.396458)
               

               
               ste (0.270416)
               

               
               jca (0.22792)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               ste (0.270416)
               

               
               jca (0.22792)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	2-421, gnl\|bosTau2\|chr29 (28318962-28318552)
	2-421, gnl\|Hg17\|chr11 (60446751-60447219)
	2-421, gnl\|Mm7\|chr19 (10551413-10551056)

	565-732, gnl\|bosTau2\|chr29 (28318459-28318286)
	565-732, gnl\|canFam2\|chr18 (58407467-58406258)
	565-732, gnl\|dasNov1\|scaffold_30355 (15843-14569)
	565-732, gnl\|echTel1\|scaffold_287861 (1411-323)
	565-732, gnl\|hg17\|chr11 (60447065-60448301)
	565-732, gnl\|Hg17\|chr11 (60447304-60447468)
	565-732, gnl\|loxAfr1\|scaffold_60643 (4870-6139)
	565-732, gnl\|mm7\|chr19 (10551167-10550130)
	565-732, gnl\|Mm7\|chr19 (10550959-10550809)
	565-732, gnl\|oryCun1\|scaffold_193644 (47449-46415)
	565-732, gnl\|panTro1\|chr9 (61381767-61383003)
	565-732, gnl\|rheMac2\|chr14 (13194371-13193165)
	565-732, gnl\|rn3\|chr1 (213527382-213526349)

	cov (0.396458)
	ste (0.270416)
	jca (0.22792)
	ldo (0.194005)
	cmu (0.186393)
	ton (0.1755)
	eye (0.170503)
	cki (0.165235)
	tbr (0.154178)
	cag (0.151194)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	nmm (0.132802)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)