Non-Coding RNA Search

Ss1.1-rche32_k19.5

Sequence:


               
               CGACGGCGCCGAGAGGCGGAGGCTTCAGGAGCTGTGCAGCCGCCAGGGGACAGGCGACTA
CAACCGCCTGGTCAGAGACGCCCGGGCCTGCCTGCTCGACCTCCTCCTGGCCTTCCCGTC
CTGCCAGCCTCCGCTCAGCCTCCTGCTCGAGCATCTTCCTAAGCTCCAGCCCAGACCGTA
TTCATGTGCAAGCTCAAGTGTGTCTCACCCAGGGAAGCTTCATTTCATTTTTAACATCGT
GGAGTTTTCGTCTCACACCACAGCCGAGGTGCGGAGAGGCGTGTGCACGGGCTGGCTGGC
CACGTTGGTGGAACCAATTCTCCAGCCAAACGCGCGTGCAGATGGCGAGAAAGCCCCGGC
GCCCAAGATATACATCGCTCCTCGAACAGCAAACTCTTTCCACTTACCCGGTGAGCCCTC
GGCCCCCGTCATCATGGTGGGCCCGGGAACTGGCATCGCCCCCTTCATTGGTTTCCTGCA
ACATAGAGAGAAGCTCCAGGAACACCACCCGGCTGGCCACTTTGGAGCGACGTGGCTGTT
TTTTGGCTGCCGACACAAGGACAGGGATTACTTATTCAGGGACGAGCTCAGGCATTTCCT
CAAGTGTGGAATTCTGACTCACTTGAAAGTCTCCTGCTCGAGAGAGGCTCCTGCCGGGGA
GGAGGAGGAGGCCCCCGCCAAGTACGTGCAGGACAGCATCCAGCGGCACGGCCAGCAGGT
GGCCAGGGCCCTTCTCCAGGAGCGGGGTTACGTCTACGTCTGTGGAGATGCTAAGAATAT
GGCCAAGGATGTCAATGATACCCTGGTGGACATAATAAGCAAAGAGGTTGGAGGTGGAAA
ACTAGAAGCAATGAAAATGTTGGCTACTTTAAAAGAGGAAAAACGTTATCTTCAGGATAT
TTGGTGATGAAATTGGAAAGTAAATGAAGGGAATTTGGCTTTTGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACGGCGCCGAGAGGCGGAGGCTTCAGGAGCTGTGCAGCCGCCAGGGGACAGGCGACTA
CAACCGCCTGGTCAGAGACGCCCGGGCCTGCCTGCTCGACCTCCTCCTGGCCTTCCCGTC
CTGCCAGCCTCCGCTCAGCCTCCTGCTCGAGCATCTTCCTAAGCTCCAGCCCAGACCGTA
TTCATGTGCAAGCTCAAGTGTGTCTCACCCAGGGAAGCTTCATTTCATTTTTAACATCGT
GGAGTTTTCGTCTCACACCACAGCCGAGGTGCGGAGAGGCGTGTGCACGGGCTGGCTGGC
CACGTTGGTGGAACCAATTCTCCAGCCAAACGCGCGTGCAGATGGCGAGAAAGCCCCGGC
GCCCAAGATATACATCGCTCCTCGAACAGCAAACTCTTTCCACTTACCCGGTGAGCCCTC
GGCCCCCGTCATCATGGTGGGCCCGGGAACTGGCATCGCCCCCTTCATTGGTTTCCTGCA
ACATAGAGAGAAGCTCCAGGAACACCACCCGGCTGGCCACTTTGGAGCGACGTGGCTGTT
TTTTGGCTGCCGACACAAGGACAGGGATTACTTATTCAGGGACGAGCTCAGGCATTTCCT
CAAGTGTGGAATTCTGACTCACTTGAAAGTCTCCTGCTCGAGAGAGGCTCCTGCCGGGGA
GGAGGAGGAGGCCCCCGCCAAGTACGTGCAGGACAGCATCCAGCGGCACGGCCAGCAGGT
GGCCAGGGCCCTTCTCCAGGAGCGGGGTTACGTCTACGTCTGTGGAGATGCTAAGAATAT
GGCCAAGGATGTCAATGATACCCTGGTGGACATAATAAGCAAAGAGGTTGGAGGTGGAAA
ACTAGAAGCAATGAAAATGTTGGCTACTTTAAAAGAGGAAAAACGTTATCTTCAGGATAT
TTGGTGATGAAATTGGAAAGTAAATGAAGGGAATTTGGCTTTTGTGGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               575-765, gnl|bosTau2|chr20 (38384536-38384349)
               

               
               575-765, gnl|Hg17|chr5 (7950173-7950360)
               

               
               575-765, gnl|Mm7|chr13 (65474278-65474091)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               575-765, gnl|bosTau2|chr20 (38384536-38384349)
               

               
               575-765, gnl|Hg17|chr5 (7950173-7950360)
               

               
               575-765, gnl|Mm7|chr13 (65474278-65474091)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               che (0.272628)
               

               
               mas (0.210305)
               

               
               ton (0.1755)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               mas (0.210305)
               

               
               ton (0.1755)

	575-765, gnl\|bosTau2\|chr20 (38384536-38384349)
	575-765, gnl\|Hg17\|chr5 (7950173-7950360)
	575-765, gnl\|Mm7\|chr13 (65474278-65474091)