Non-Coding RNA Search

Ss1.1-rche33_e8.5

Sequence:


               
               ACCTACTCGAGCGACGCGGGGAGAGCTGCGGTCCCGACGCGGGTGGAGCAGCCGGCGAGC
AGGGAGAAGATGAGCCTTAAGTCTGAACGCCGAGGAATTCATGTGGATCAGTCAGAGCTC
CTATGCAAGAAAGGATGTGGTTACTACGGCAACCCTGCTTGGCAGGGTTTCTGCTCCAAG
TGCTGGAGGGAGGAGTACCACAAAGCCAGGCAGAAGCAGATTCAGGAGGATTGGGAACTG
GCAGAGCGACTACAGCGGGAGGAGGAAGAGGCCTTTGCCAGCAGTCAGAGCAGCCAAGGA
GCCCAGTCCCTCACATTTTCCAAGTTTGAGGAAAAGAAGACCAATGAGAAGACCCGCAAA
GTTACCACAGTGAAGAAATTCTTCAGCGCTTCTTCCAGGGTTGGATCAAAGAAGGGTAAT
TTTGAGATTCTGTTTTTCCCTTCTGTGCCCTGTGAGATACAGAGTAGATGCACAGTGCAC
ATGGGCTCAGCCTTTTCCTTCCTGTAAGTGTGCAGAAGATAGTGCAGATTTGAGACACCG
TGTTTGAGGCTCAAATGATCCACAAAATATCTTTGGCTGGAGGACATTTGTGCTTTAGGG
AACTTGTCTCTTTTGGAGGAATAAAGGTAATTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTACTCGAGCGACGCGGGGAGAGCTGCGGTCCCGACGCGGGTGGAGCAGCCGGCGAGC
AGGGAGAAGATGAGCCTTAAGTCTGAACGCCGAGGAATTCATGTGGATCAGTCAGAGCTC
CTATGCAAGAAAGGATGTGGTTACTACGGCAACCCTGCTTGGCAGGGTTTCTGCTCCAAG
TGCTGGAGGGAGGAGTACCACAAAGCCAGGCAGAAGCAGATTCAGGAGGATTGGGAACTG
GCAGAGCGACTACAGCGGGAGGAGGAAGAGGCCTTTGCCAGCAGTCAGAGCAGCCAAGGA
GCCCAGTCCCTCACATTTTCCAAGTTTGAGGAAAAGAAGACCAATGAGAAGACCCGCAAA
GTTACCACAGTGAAGAAATTCTTCAGCGCTTCTTCCAGGGTTGGATCAAAGAAGGGTAAT
TTTGAGATTCTGTTTTTCCCTTCTGTGCCCTGTGAGATACAGAGTAGATGCACAGTGCAC
ATGGGCTCAGCCTTTTCCTTCCTGTAAGTGTGCAGAAGATAGTGCAGATTTGAGACACCG
TGTTTGAGGCTCAAATGATCCACAAAATATCTTTGGCTGGAGGACATTTGTGCTTTAGGG
AACTTGTCTCTTTTGGAGGAATAAAGGTAATTGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51094480|gb|EAL23737.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51094480|gb|EAL23737.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               327-484, - strand, RNAz p=0.891221

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               327-484, - strand, RNAz p=0.891221

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               248-636, gnl|bosTau2|chr25 (24086909-24087284)
               

               
               248-636, gnl|Hg17|chr7 (65684363-65684765)
               

               
               248-636, gnl|Mm7|chr5 (129428699-129429082)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-636, gnl|bosTau2|chr25 (24086909-24087284)
               

               
               248-636, gnl|Hg17|chr7 (65684363-65684765)
               

               
               248-636, gnl|Mm7|chr5 (129428699-129429082)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.272628)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               ste (0.135208)

	248-636, gnl\|bosTau2\|chr25 (24086909-24087284)
	248-636, gnl\|Hg17\|chr7 (65684363-65684765)
	248-636, gnl\|Mm7\|chr5 (129428699-129429082)