Non-Coding RNA Search

Ss1.1-rche33_g3.5

Sequence:


               
               CTGGAGCCTCGTGACCGGGCTGGGGGTGCCCTTTGGCTCCAAGAGGCTAGAGGATGGAAG
GGCCACCAGTGGAAACTCCAACTCACGGCCACAGGCAAAGTCCGACGTACTTTCTCTTTC
AGATTTGGGAGGAAGCCTACCAGCGGGTGGCTCATCAGCAGGAGATTTATGAAGGTCCTG
GAGCTAATCCACACGCTTGCTTTCAGGGTGCAGGAAGCCAGTTTTCCACTAACCCAGCCC
CTGGGTTAGCTCTCCCCCTTAGCTCTTGACTTTGCCTCACAGCTGCTAACTTGCCCCAAC
ATAACCCAACTGCGGTCGGGACTCAGTCAGTAGGTGCCTTCCAAGCCTTTCCCCTCACTC
TTTGCAGGTAATCACGGAAGTAGTTGGGATATTTAGATGGTTCGAAGCTGGAAGGTAAGA
ATCCGAAGCCAACCGGACCTAATGCTCTGGCCTTGACCCCCACAGCCCAGCTCCAGGACC
TTCTCCAGCTGAAGCAGGAGAACGCCTACCTGACCACCATCACCAAGCAGATCACGCCCT
ACGTCCGCTCCATTGCCAAGGTGAAGGAGCGGCTGGAGCCCAGGTTTCAGGCACCTGTGG
ACGAACCGTCAGACCATCTACAGAACACGTATGATGACAGCGGGACTAGTGAGGTTCAGA
CCAGGAATGATCCAGTAAGCGTCTCAGAAAAGAAGGAGAAGACCTCAGAGCCTCGAGGAA
ACGGCAGGACCCTGAGCAGCCTCACAGAGGAGCCTCCACAGAAAAATAAAGATTCTCACA
GACCCAAACCGAAACCTGGGGGTGATGCCCCCACACGGAGAGAGCGCCCAGTTTAGCAAC
CGGGACTGGCCCCCGGGGTTGAGCATTTTACAAAGGGTGGGACATCTAAGATAAGGCGTA
CCTGTCATAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAGCCTCGTGACCGGGCTGGGGGTGCCCTTTGGCTCCAAGAGGCTAGAGGATGGAAG
GGCCACCAGTGGAAACTCCAACTCACGGCCACAGGCAAAGTCCGACGTACTTTCTCTTTC
AGATTTGGGAGGAAGCCTACCAGCGGGTGGCTCATCAGCAGGAGATTTATGAAGGTCCTG
GAGCTAATCCACACGCTTGCTTTCAGGGTGCAGGAAGCCAGTTTTCCACTAACCCAGCCC
CTGGGTTAGCTCTCCCCCTTAGCTCTTGACTTTGCCTCACAGCTGCTAACTTGCCCCAAC
ATAACCCAACTGCGGTCGGGACTCAGTCAGTAGGTGCCTTCCAAGCCTTTCCCCTCACTC
TTTGCAGGTAATCACGGAAGTAGTTGGGATATTTAGATGGTTCGAAGCTGGAAGGTAAGA
ATCCGAAGCCAACCGGACCTAATGCTCTGGCCTTGACCCCCACAGCCCAGCTCCAGGACC
TTCTCCAGCTGAAGCAGGAGAACGCCTACCTGACCACCATCACCAAGCAGATCACGCCCT
ACGTCCGCTCCATTGCCAAGGTGAAGGAGCGGCTGGAGCCCAGGTTTCAGGCACCTGTGG
ACGAACCGTCAGACCATCTACAGAACACGTATGATGACAGCGGGACTAGTGAGGTTCAGA
CCAGGAATGATCCAGTAAGCGTCTCAGAAAAGAAGGAGAAGACCTCAGAGCCTCGAGGAA
ACGGCAGGACCCTGAGCAGCCTCACAGAGGAGCCTCCACAGAAAAATAAAGATTCTCACA
GACCCAAACCGAAACCTGGGGGTGATGCCCCCACACGGAGAGAGCGCCCAGTTTAGCAAC
CGGGACTGGCCCCCGGGGTTGAGCATTTTACAAAGGGTGGGACATCTAAGATAAGGCGTA
CCTGTCATAATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56203105|emb|CAI19444.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56203105|emb|CAI19444.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               456-585, - strand, RNAz p=0.659203
               

               
               742-873, - strand, RNAz p=0.999789

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               456-585, - strand, RNAz p=0.659203
               

               
               742-873, - strand, RNAz p=0.999789

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-234, gnl|bosTau2|chr16 (34934359-34934115)
               

               
               1-234, gnl|Hg17|chr1 (6206897-6207148)
               

               
               1-234, gnl|Mm7|chr4 (151301481-151301248)
               


               
               272-585, gnl|bosTau2|chr16 (34933958-34933641)
               

               
               272-585, gnl|Hg17|chr1 (6207189-6207511)
               

               
               272-585, gnl|Mm7|chr4 (151301211-151300924)
               


               
               663-873, gnl|bosTau2|chr16 (34927440-34927236)
               

               
               663-873, gnl|Hg17|chr1 (6213560-6213769)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-234, gnl|bosTau2|chr16 (34934359-34934115)
               

               
               1-234, gnl|Hg17|chr1 (6206897-6207148)
               

               
               1-234, gnl|Mm7|chr4 (151301481-151301248)
               


               
               272-585, gnl|bosTau2|chr16 (34933958-34933641)
               

               
               272-585, gnl|Hg17|chr1 (6207189-6207511)
               

               
               272-585, gnl|Mm7|chr4 (151301211-151300924)
               


               
               663-873, gnl|bosTau2|chr16 (34927440-34927236)
               

               
               663-873, gnl|Hg17|chr1 (6213560-6213769)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.272628)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               hlv (0.139256)

	456-585, - strand, RNAz p=0.659203
	742-873, - strand, RNAz p=0.999789

	1-234, gnl\|bosTau2\|chr16 (34934359-34934115)
	1-234, gnl\|Hg17\|chr1 (6206897-6207148)
	1-234, gnl\|Mm7\|chr4 (151301481-151301248)

	272-585, gnl\|bosTau2\|chr16 (34933958-34933641)
	272-585, gnl\|Hg17\|chr1 (6207189-6207511)
	272-585, gnl\|Mm7\|chr4 (151301211-151300924)

	663-873, gnl\|bosTau2\|chr16 (34927440-34927236)
	663-873, gnl\|Hg17\|chr1 (6213560-6213769)