Non-Coding RNA Search

Ss1.1-rche33_n4.5

Sequence:


               
               GTGGATCCAGAATGAGCTGTCTTTACCTTACAGGATCCTCAGAGAAGTGCATTCAGAATG
AGGAGGGCGTTTGGTTCACCCCAGGAGAATTTGAAATTGAGGGAAAACAGAAACACAAAA
AGTACTGGAAGCGGAGTGTGCTTTGTGGAGGGAAGACCCTAGAACATCTGATAAAGAAAG
GACTTTTGATCTGTCCTCCAAAGAGAAGTCTCAAGAGAAAGGTAAATAGCAGATGAATTT
CTACCACATTCTCAGTCACCATGTTGCAGACTTTCCATGTCCCAAGGCTCAAGTGCAAGT
CCGTGACTTTCCCAGCCCTGAGTCACCTTCCCATTTCTGCACTGCATCTTCACGATGGCC
GCTTTAGCACACTGATACTGAACGTGCCTGCATTACTTTCATAGTTCATTTAAGATGGAG
GAGCAAATAACTTTTTAAAATAAGGACTAGAACAAAAGCATATGTTTTAGGGAAAGGTCT
GTATATTTGGAGGATAATCAAGCAAAAGGTGTCTTATACAGAGTGCTTTAGTGTGAAAAG
TAAATACGGTATTGAAATAGACAAGAACAATATGAGAAGAGTAAGGTCATCCTTGATTGA
ACTTGAAGTATTCCTCAATTCAGCATGCTCTTTATTGGTAGCTCCAGGATGAAATAATGT
GTTTGGACTGAGCTTTGTCTCTGTAGAGCCTCCCCTCCCGGGTGAAATGGCAGCCATCCA
TGACTATACCCACTGCTCCTCCTCAACTATGTTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGATCCAGAATGAGCTGTCTTTACCTTACAGGATCCTCAGAGAAGTGCATTCAGAATG
AGGAGGGCGTTTGGTTCACCCCAGGAGAATTTGAAATTGAGGGAAAACAGAAACACAAAA
AGTACTGGAAGCGGAGTGTGCTTTGTGGAGGGAAGACCCTAGAACATCTGATAAAGAAAG
GACTTTTGATCTGTCCTCCAAAGAGAAGTCTCAAGAGAAAGGTAAATAGCAGATGAATTT
CTACCACATTCTCAGTCACCATGTTGCAGACTTTCCATGTCCCAAGGCTCAAGTGCAAGT
CCGTGACTTTCCCAGCCCTGAGTCACCTTCCCATTTCTGCACTGCATCTTCACGATGGCC
GCTTTAGCACACTGATACTGAACGTGCCTGCATTACTTTCATAGTTCATTTAAGATGGAG
GAGCAAATAACTTTTTAAAATAAGGACTAGAACAAAAGCATATGTTTTAGGGAAAGGTCT
GTATATTTGGAGGATAATCAAGCAAAAGGTGTCTTATACAGAGTGCTTTAGTGTGAAAAG
TAAATACGGTATTGAAATAGACAAGAACAATATGAGAAGAGTAAGGTCATCCTTGATTGA
ACTTGAAGTATTCCTCAATTCAGCATGCTCTTTATTGGTAGCTCCAGGATGAAATAATGT
GTTTGGACTGAGCTTTGTCTCTGTAGAGCCTCCCCTCCCGGGTGAAATGGCAGCCATCCA
TGACTATACCCACTGCTCCTCCTCAACTATGTTAAC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-170, gnl|bosTau2|chr2 (70852668-70852837)
               

               
               1-170, gnl|canFam2|chr25 (45427456-45427641)
               

               
               1-170, gnl|dasNov1|scaffold_4425 (28703-28516)
               

               
               1-170, gnl|echTel1|scaffold_301936 (5071-4896)
               

               
               1-170, gnl|hg17|chr2 (230867724-230867911)
               

               
               1-170, gnl|Hg17|chr2 (230867931-230867765)
               

               
               1-170, gnl|loxAfr1|scaffold_4216 (48586-48773)
               

               
               1-170, gnl|mm7|chr1 (85209628-85209809)
               

               
               1-170, gnl|Mm7|chr8_random (4197359-4197189)
               

               
               1-170, gnl|oryCun1|scaffold_129778 (29366-29558)
               

               
               1-170, gnl|panTro1|chr13 (121511552-121511721)
               

               
               1-170, gnl|rheMac2|chr12 (94051282-94051471)
               

               
               1-170, gnl|rn3|chr9 (84443243-84443424)
               


               
               175-745, gnl|bosTau2|chr2 (70853604-70854172)
               

               
               175-745, gnl|Hg17|chr2 (230866947-230865935)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr2 (70852668-70852837)
               

               
               1-170, gnl|canFam2|chr25 (45427456-45427641)
               

               
               1-170, gnl|dasNov1|scaffold_4425 (28703-28516)
               

               
               1-170, gnl|echTel1|scaffold_301936 (5071-4896)
               

               
               1-170, gnl|hg17|chr2 (230867724-230867911)
               

               
               1-170, gnl|Hg17|chr2 (230867931-230867765)
               

               
               1-170, gnl|loxAfr1|scaffold_4216 (48586-48773)
               

               
               1-170, gnl|mm7|chr1 (85209628-85209809)
               

               
               1-170, gnl|Mm7|chr8_random (4197359-4197189)
               

               
               1-170, gnl|oryCun1|scaffold_129778 (29366-29558)
               

               
               1-170, gnl|panTro1|chr13 (121511552-121511721)
               

               
               1-170, gnl|rheMac2|chr12 (94051282-94051471)
               

               
               1-170, gnl|rn3|chr9 (84443243-84443424)
               


               
               175-745, gnl|bosTau2|chr2 (70853604-70854172)
               

               
               175-745, gnl|Hg17|chr2 (230866947-230865935)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               che (0.136314)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	1-170, gnl\|bosTau2\|chr2 (70852668-70852837)
	1-170, gnl\|canFam2\|chr25 (45427456-45427641)
	1-170, gnl\|dasNov1\|scaffold_4425 (28703-28516)
	1-170, gnl\|echTel1\|scaffold_301936 (5071-4896)
	1-170, gnl\|hg17\|chr2 (230867724-230867911)
	1-170, gnl\|Hg17\|chr2 (230867931-230867765)
	1-170, gnl\|loxAfr1\|scaffold_4216 (48586-48773)
	1-170, gnl\|mm7\|chr1 (85209628-85209809)
	1-170, gnl\|Mm7\|chr8_random (4197359-4197189)
	1-170, gnl\|oryCun1\|scaffold_129778 (29366-29558)
	1-170, gnl\|panTro1\|chr13 (121511552-121511721)
	1-170, gnl\|rheMac2\|chr12 (94051282-94051471)
	1-170, gnl\|rn3\|chr9 (84443243-84443424)

	175-745, gnl\|bosTau2\|chr2 (70853604-70854172)
	175-745, gnl\|Hg17\|chr2 (230866947-230865935)