Ss1.1-rche33_p19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGGGGAGCGAGGTCCGGTCTGGCGCGCGTGCTCTCTCTGTCTCTCCATCTCGAGCTCT CCATTGCCTCAGTTTCCCTCCACCGGCGCGCGGGGCCCAGGTCTCTCTGGCAGAGCGCAA TGAGGCGGGCGGCGCTGCGGCTTTGTACCTTAAGCAAGGGACTGCTTGCTCCCAGCAGAG GACTGACTCAAGGATCTCAGAATCCCGAGGAGAGAATTTTCCACATTAATGAAGTTCGAG CTAAGTTGCTGGAAATAGTAGGAGTGTCCACAAACTGGAGAGACCATGTGAAAGCAATGG AGGAACGAAAATTACTGAGTAGTTTTCTGGCTGAGTCACAAAAAGCACTGCCATCTAGGA GAATGAAAGACAGTTATACCGAAGTTCTCTTGCCTTTGGGCAGTCAGCCTGAATTGCGAG AGAAATATTTGACTGTTCAAAACACCGTAAGGTTTGGCAGGATTCTTGAGGATCTTGACA GCTTAGGAGTTCTTATTTGCTACAAGCACACCAAAATTCACTCAGCTAAGATGTCTCCTT TATCAATAGTTACAGCCCTGGTGGACAAGATTGATATGTGTAAGAAGAGCTTAAGCCCAG AACAGGACATCAAGTTCAGTGGCCACGTTAGTTGGGTTGGGAAGACATCCATGGAAGTGA AGATGCAAATGTTCCAGTTACATGACAATGAATTTTTTCCTGTTTTGAGTGCGACGTTTG TCATGGTGGCTCGTGATTCTGAAAATAAACGGCCAGCATTTGTAAATCCACTCATCCTTG AAAGCCCAGAGGAAGAAGAGCTCTTCAGACAAGGAGAATTGAACAAAGGGAGAAGGGTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGGGGAGCGAGGTCCGGTCTGGCGCGCGTGCTCTCTCTGTCTCTCCATCTCGAGCTCT CCATTGCCTCAGTTTCCCTCCACCGGCGCGCGGGGCCCAGGTCTCTCTGGCAGAGCGCAA TGAGGCGGGCGGCGCTGCGGCTTTGTACCTTAAGCAAGGGACTGCTTGCTCCCAGCAGAG GACTGACTCAAGGATCTCAGAATCCCGAGGAGAGAATTTTCCACATTAATGAAGTTCGAG CTAAGTTGCTGGAAATAGTAGGAGTGTCCACAAACTGGAGAGACCATGTGAAAGCAATGG AGGAACGAAAATTACTGAGTAGTTTTCTGGCTGAGTCACAAAAAGCACTGCCATCTAGGA GAATGAAAGACAGTTATACCGAAGTTCTCTTGCCTTTGGGCAGTCAGCCTGAATTGCGAG AGAAATATTTGACTGTTCAAAACACCGTAAGGTTTGGCAGGATTCTTGAGGATCTTGACA GCTTAGGAGTTCTTATTTGCTACAAGCACACCAAAATTCACTCAGCTAAGATGTCTCCTT TATCAATAGTTACAGCCCTGGTGGACAAGATTGATATGTGTAAGAAGAGCTTAAGCCCAG AACAGGACATCAAGTTCAGTGGCCACGTTAGTTGGGTTGGGAAGACATCCATGGAAGTGA AGATGCAAATGTTCCAGTTACATGACAATGAATTTTTTCCTGTTTTGAGTGCGACGTTTG TCATGGTGGCTCGTGATTCTGAAAATAAACGGCCAGCATTTGTAAATCCACTCATCCTTG AAAGCCCAGAGGAAGAAGAGCTCTTCAGACAAGGAGAATTGAACAAAGGGAGAAGGGTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 336-453, + strand, RNAz p=0.719197 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 336-453, + strand, RNAz p=0.719197 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BX648512, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 279-453, gnl|bosTau2|chrX (37506186-37506012) | |
| 279-453, gnl|canFam2|chrX (19365752-19365947) | |
| 279-453, gnl|danRer3|chr24 (18988398-18988592) | |
| 279-453, gnl|dasNov1|scaffold_44233 (6163-5973) | |
| 279-453, gnl|fr1|chrUn (157290790-157290603) | |
| 279-453, gnl|galGal2|chr1 (111692838-111692647) | |
| 279-453, gnl|hg17|chrX (23508579-23508774) | |
| 279-453, gnl|Hg17|chrX (23508762-23508588) | |
| 279-453, gnl|mm7|chrX (150074259-150074066) | |
| 279-453, gnl|Mm7|chrX (150074076-150074250) | |
| 279-453, gnl|monDom2|scaffold_48 (8347271-8347078) | |
| 279-453, gnl|panTro1|chrX (24343075-24343270) | |
| 279-453, gnl|rheMac2|chrX (21530993-21531188) | |
| 279-453, gnl|rn3|chrX (61635772-61635967) | |
| 279-453, gnl|tetNig1|chrUn_random (52937897-52938082) | |
| 573-677, gnl|bosTau2|chrX (37500413-37500309) | |
| 573-677, gnl|canFam2|chrX (19360027-19360112) | |
| 573-677, gnl|danRer3|chr24 (18987092-18987166) | |
| 573-677, gnl|dasNov1|scaffold_64490 (46211-46296) | |
| 573-677, gnl|echTel1|scaffold_313039 (1480-1400) | |
| 573-677, gnl|fr1|chrUn (157291258-157291182) | |
| 573-677, gnl|galGal2|chr1 (111694895-111694808) | |
| 573-677, gnl|hg17|chrX (23499642-23499727) | |
| 573-677, gnl|Hg17|chrX (23499759-23499655) | |
| 573-677, gnl|loxAfr1|scaffold_154619 (4321-4401) | |
| 573-677, gnl|mm7|chrX (150083275-150083190) | |
| 573-677, gnl|Mm7|chrX (150083156-150083260) | |
| 573-677, gnl|monDom2|scaffold_48 (8354540-8354463) | |
| 573-677, gnl|panTro1|chrX (24333371-24333456) | |
| 573-677, gnl|rheMac2|chrX (21521715-21521800) | |
| 573-677, gnl|rn3|chrX (61621841-61621926) | |
| 573-677, gnl|tetNig1|chrUn_random (52937435-52937513) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 279-453, gnl|bosTau2|chrX (37506186-37506012) | |
| 279-453, gnl|canFam2|chrX (19365752-19365947) | |
| 279-453, gnl|danRer3|chr24 (18988398-18988592) | |
| 279-453, gnl|dasNov1|scaffold_44233 (6163-5973) | |
| 279-453, gnl|fr1|chrUn (157290790-157290603) | |
| 279-453, gnl|galGal2|chr1 (111692838-111692647) | |
| 279-453, gnl|hg17|chrX (23508579-23508774) | |
| 279-453, gnl|Hg17|chrX (23508762-23508588) | |
| 279-453, gnl|mm7|chrX (150074259-150074066) | |
| 279-453, gnl|Mm7|chrX (150074076-150074250) | |
| 279-453, gnl|monDom2|scaffold_48 (8347271-8347078) | |
| 279-453, gnl|panTro1|chrX (24343075-24343270) | |
| 279-453, gnl|rheMac2|chrX (21530993-21531188) | |
| 279-453, gnl|rn3|chrX (61635772-61635967) | |
| 279-453, gnl|tetNig1|chrUn_random (52937897-52938082) | |
| 573-677, gnl|bosTau2|chrX (37500413-37500309) | |
| 573-677, gnl|canFam2|chrX (19360027-19360112) | |
| 573-677, gnl|danRer3|chr24 (18987092-18987166) | |
| 573-677, gnl|dasNov1|scaffold_64490 (46211-46296) | |
| 573-677, gnl|echTel1|scaffold_313039 (1480-1400) | |
| 573-677, gnl|fr1|chrUn (157291258-157291182) | |
| 573-677, gnl|galGal2|chr1 (111694895-111694808) | |
| 573-677, gnl|hg17|chrX (23499642-23499727) | |
| 573-677, gnl|Hg17|chrX (23499759-23499655) | |
| 573-677, gnl|loxAfr1|scaffold_154619 (4321-4401) | |
| 573-677, gnl|mm7|chrX (150083275-150083190) | |
| 573-677, gnl|Mm7|chrX (150083156-150083260) | |
| 573-677, gnl|monDom2|scaffold_48 (8354540-8354463) | |
| 573-677, gnl|panTro1|chrX (24333371-24333456) | |
| 573-677, gnl|rheMac2|chrX (21521715-21521800) | |
| 573-677, gnl|rn3|chrX (61621841-61621926) | |
| 573-677, gnl|tetNig1|chrUn_random (52937435-52937513) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| che (0.272628) | |
| nlu (0.191681) | |
| cst (0.140036) | |
| cbl (0.114797) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) | |
| nlu (0.191681) | |
| cst (0.140036) | |
| cbl (0.114797) |