Non-Coding RNA Search

Ss1.1-rche34_g18.5

Sequence:


               
               GGCGGTGGTGGCGGCAGCGGGTCGGTGTAGAAAATGGCGCTGGTGCAGCGGCTCGGGCCT
CTCCCCGCGGCGCTGCGGAGGGCTTGAGGCTCGCGAGCCTCACTCGCCGCGCCCCACTTG
CTCGTGCACTTTACACACATGAGAGAATTGGAAGCTAAAGCTACCAAAGACGTAGAAAGG
AATCTTAGCAGGGATTTAGTGCAAGAAGAAGAACAGTTGATGGAAGAAAAGAAAAAGAAA
AAAGACGACAAGAAAAAGAAGGAAGCTGCTCAAAAGCTTTGGGGAGGAAAAACACAGCGA
AAGGCAATTCTTAAAGCTATTTTTAAAATCTTTTTTTCATTAAAGCAAGGTTGTTGATAT
GCATTGTTATTCAACTCCAGGATGGGAGAGAGAAGAATTGTGTGACTCATGATTGAGGCG
GCCCTTATGGCGGGCTGTCAAACTGTTTTGGCTTCCCCGTTATTACTTTGTAACTCAAAT
TGTTGCCTTTATAAAAAGATACTATGTGTTCGCATTTTTCCCCCCCAATAGGATAAAACT
ACCTCCTAACATACTCCTTGGATTTGAGTCTTTGGACACGTGTGCCTTTCCCTCAGTCTT
TCATCGAAAAGTCTTCTTGTCTGGAGCTACTTTATTCTTTGTTATCTGTGTGCCGTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGTGGTGGCGGCAGCGGGTCGGTGTAGAAAATGGCGCTGGTGCAGCGGCTCGGGCCT
CTCCCCGCGGCGCTGCGGAGGGCTTGAGGCTCGCGAGCCTCACTCGCCGCGCCCCACTTG
CTCGTGCACTTTACACACATGAGAGAATTGGAAGCTAAAGCTACCAAAGACGTAGAAAGG
AATCTTAGCAGGGATTTAGTGCAAGAAGAAGAACAGTTGATGGAAGAAAAGAAAAAGAAA
AAAGACGACAAGAAAAAGAAGGAAGCTGCTCAAAAGCTTTGGGGAGGAAAAACACAGCGA
AAGGCAATTCTTAAAGCTATTTTTAAAATCTTTTTTTCATTAAAGCAAGGTTGTTGATAT
GCATTGTTATTCAACTCCAGGATGGGAGAGAGAAGAATTGTGTGACTCATGATTGAGGCG
GCCCTTATGGCGGGCTGTCAAACTGTTTTGGCTTCCCCGTTATTACTTTGTAACTCAAAT
TGTTGCCTTTATAAAAAGATACTATGTGTTCGCATTTTTCCCCCCCAATAGGATAAAACT
ACCTCCTAACATACTCCTTGGATTTGAGTCTTTGGACACGTGTGCCTTTCCCTCAGTCTT
TCATCGAAAAGTCTTCTTGTCTGGAGCTACTTTATTCTTTGTTATCTGTGTGCCGTTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               25-143, + strand, RNAz p=0.942343

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-143, + strand, RNAz p=0.942343

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-143, gnl|bosTau2|chr25 (19983854-19983712)
               

               
               1-143, gnl|dasNov1|scaffold_4518 (7570-7711)
               

               
               1-143, gnl|echTel1|scaffold_224196 (8698-8586)
               

               
               1-143, gnl|hg17|chr16 (24648526-24648667)
               

               
               1-143, gnl|Hg17|chr16 (24648526-24648668)
               

               
               1-143, gnl|loxAfr1|scaffold_26361 (170-314)
               

               
               1-143, gnl|mm7|chr7 (119226984-119227125)
               

               
               1-143, gnl|Mm7|chr7 (119226984-119227126)
               

               
               1-143, gnl|monDom2|scaffold_49 (4116271-4116418)
               

               
               1-143, gnl|panTro1|chr18 (25289380-25289506)
               

               
               1-143, gnl|rn3|chr1 (182122926-182123067)
               


               
               281-526, gnl|bosTau2|chr25 (19983175-19982930)
               

               
               281-526, gnl|Hg17|chr16 (24649320-24649565)
               

               
               281-526, gnl|Mm7|chr7 (119227614-119227852)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chr25 (19983854-19983712)
               

               
               1-143, gnl|dasNov1|scaffold_4518 (7570-7711)
               

               
               1-143, gnl|echTel1|scaffold_224196 (8698-8586)
               

               
               1-143, gnl|hg17|chr16 (24648526-24648667)
               

               
               1-143, gnl|Hg17|chr16 (24648526-24648668)
               

               
               1-143, gnl|loxAfr1|scaffold_26361 (170-314)
               

               
               1-143, gnl|mm7|chr7 (119226984-119227125)
               

               
               1-143, gnl|Mm7|chr7 (119226984-119227126)
               

               
               1-143, gnl|monDom2|scaffold_49 (4116271-4116418)
               

               
               1-143, gnl|panTro1|chr18 (25289380-25289506)
               

               
               1-143, gnl|rn3|chr1 (182122926-182123067)
               


               
               281-526, gnl|bosTau2|chr25 (19983175-19982930)
               

               
               281-526, gnl|Hg17|chr16 (24649320-24649565)
               

               
               281-526, gnl|Mm7|chr7 (119227614-119227852)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	1-143, gnl\|bosTau2\|chr25 (19983854-19983712)
	1-143, gnl\|dasNov1\|scaffold_4518 (7570-7711)
	1-143, gnl\|echTel1\|scaffold_224196 (8698-8586)
	1-143, gnl\|hg17\|chr16 (24648526-24648667)
	1-143, gnl\|Hg17\|chr16 (24648526-24648668)
	1-143, gnl\|loxAfr1\|scaffold_26361 (170-314)
	1-143, gnl\|mm7\|chr7 (119226984-119227125)
	1-143, gnl\|Mm7\|chr7 (119226984-119227126)
	1-143, gnl\|monDom2\|scaffold_49 (4116271-4116418)
	1-143, gnl\|panTro1\|chr18 (25289380-25289506)
	1-143, gnl\|rn3\|chr1 (182122926-182123067)

	281-526, gnl\|bosTau2\|chr25 (19983175-19982930)
	281-526, gnl\|Hg17\|chr16 (24649320-24649565)
	281-526, gnl\|Mm7\|chr7 (119227614-119227852)