Non-Coding RNA Search

Ss1.1-rche34_h3.5

Sequence:


               
               TTTTTTCTCGCAGCGGCGCCTCGGACCGGCGCCGCGCAGCGTCGGGCTCGGGCGGCAGCG
TTGGGAGCGCGGGCGGCGGCCTCGGGAACGCAGGCGGCGGCGCTTCAGCTCGCGCGGTGC
TCGGCTGAGGCGGCGGGTGAAGCGGGCGCCACCCGCCGGCCGGACCGGCGCCTCAGCTTC
ACCGGGGCCCGCGGCGCGGGACCCAGGACCGAGAAGGAGGCGGCGCCCCTGCTGCCAGGA
GCCCGGCCCGGTGCCCGCTGGGAGGGGGCCGCGGCCGGACGTTCCCGGCCCGGAGCGTTC
CCGACGCGACTCCCGGCGAGGCCCTCCGAGCTCCCATCCGCCCCCTGGGGCTGCCCTCAG
CCTCCCCCGACTCACCTGCGCGGGCTGCCTGGCACCCAGGTGCGGGGGCGTGGGCGCGGC
GTGGGCGCCTCCCCAGACCGCCAGCGGGGCGGGGGCGGGGCCGCCCTCGGCCTCACCGGG
CGGCCCGTCGCCTTCAGTCTCACCGGTCCGCCCGCCGCGCCCGGTCGCGCGGCGTGAGCT
CCCCCGGGACCGCGGCTCGGGATGCTGTCCCCCAGCTCGGCCCCTCGCGCGCCGCCCGCC
ATCCCTGCCTTTGACTCCTGGGCCATGCCCCAATGTTTACATGCCGGTGAAGCCCCCGGC
CACTCCGAACCTCTCCGAGCCCCAGCTCCCCGAGGGTGAAGCCATCCGGCCTGCGAACTG
GACTGGTCCTTCAGACCTGCGTCCTCTGGACTCGGATCTCCATCCGCGCTGCCGCCTCAG
CCACCATCTGGGCAGGATCCGGCTCTGGTGTTTTGAGGAGGGGGTGTGGTGTAGGGAAAG
GAATCCTGGGGATTTCTGGCTCCCTCCCTTTTTTTGGCCTTCGGGGCTTCAGACTCAGGG
AACTCGCTCATGGCTTTCTTGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCTCGCAGCGGCGCCTCGGACCGGCGCCGCGCAGCGTCGGGCTCGGGCGGCAGCG
TTGGGAGCGCGGGCGGCGGCCTCGGGAACGCAGGCGGCGGCGCTTCAGCTCGCGCGGTGC
TCGGCTGAGGCGGCGGGTGAAGCGGGCGCCACCCGCCGGCCGGACCGGCGCCTCAGCTTC
ACCGGGGCCCGCGGCGCGGGACCCAGGACCGAGAAGGAGGCGGCGCCCCTGCTGCCAGGA
GCCCGGCCCGGTGCCCGCTGGGAGGGGGCCGCGGCCGGACGTTCCCGGCCCGGAGCGTTC
CCGACGCGACTCCCGGCGAGGCCCTCCGAGCTCCCATCCGCCCCCTGGGGCTGCCCTCAG
CCTCCCCCGACTCACCTGCGCGGGCTGCCTGGCACCCAGGTGCGGGGGCGTGGGCGCGGC
GTGGGCGCCTCCCCAGACCGCCAGCGGGGCGGGGGCGGGGCCGCCCTCGGCCTCACCGGG
CGGCCCGTCGCCTTCAGTCTCACCGGTCCGCCCGCCGCGCCCGGTCGCGCGGCGTGAGCT
CCCCCGGGACCGCGGCTCGGGATGCTGTCCCCCAGCTCGGCCCCTCGCGCGCCGCCCGCC
ATCCCTGCCTTTGACTCCTGGGCCATGCCCCAATGTTTACATGCCGGTGAAGCCCCCGGC
CACTCCGAACCTCTCCGAGCCCCAGCTCCCCGAGGGTGAAGCCATCCGGCCTGCGAACTG
GACTGGTCCTTCAGACCTGCGTCCTCTGGACTCGGATCTCCATCCGCGCTGCCGCCTCAG
CCACCATCTGGGCAGGATCCGGCTCTGGTGTTTTGAGGAGGGGGTGTGGTGTAGGGAAAG
GAATCCTGGGGATTTCTGGCTCCCTCCCTTTTTTTGGCCTTCGGGGCTTCAGACTCAGGG
AACTCGCTCATGGCTTTCTTGATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               770-877, - strand, RNAz p=0.897831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               770-877, - strand, RNAz p=0.897831

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               55-924, gnl|bosTau2|chr11 (77457617-77456712)
               

               
               55-924, gnl|Hg17|chr9 (127822803-127821956)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-924, gnl|bosTau2|chr11 (77457617-77456712)
               

               
               55-924, gnl|Hg17|chr9 (127822803-127821956)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	55-924, gnl\|bosTau2\|chr11 (77457617-77456712)
	55-924, gnl\|Hg17\|chr9 (127822803-127821956)