Ss1.1-rche34_p7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTGCTGGAGGGCATCCGCATCTGCAGAAAGGGCTTCCCCAACCGCATCCTCTATGGGG ACTTCCGGCAGAGGTATCGCATCCCTGAACCCTGCGGCCATCCCCGAGGGCCAGTTCATT GACAGCAGGAAAGGAGCAGAGAAGCTGCTGGGCTCCCTGGACATTGACCACAACCAGTAC AAGTTTGGCCACACCAAGGTGTTCTTCAAGGCAGGGCTGCTGGGGCTGCTGGAGGAGATG CGGGACGAGAGGTTGAGCCGCATCATCACCCGCATCCAGGCTCAGTCCCGGGGTGTGCTC TCCAGAATGGAGTTCAAGAAGCTGCTGGAACGCAGAGACTCCCTGCTGATAATCCAGTGG AACATTCGGGCCTTCATGAGCGTCAAGAACTGGCCCTGGATGAAGCTCTACTTCAAGATC AAGCCGCTGCTGAAGAGCGCAGAGACAGAGAAGGAGATGGCTACCATGAAGGAGGAGTTT GGGCGCCTCAAAGAGGCGCTGGAGAAGTCAGAGGCCCGCCGCAAGGAGCTAGAGGAGAAG ATGGTGTCCCTGCTGCAGGAGAAGAACGACCTGCAGCTCCAAGTGCAGGCGGAACAAGAC AATCTGGCTGATGCAGAGGAGCGCTGTGACCAGCTAATCAAGAACAAGATCCAGTTGGAG GCCAAGGTGAAGGAGATGACCGAGAGGCTGGAGGACGAGGAGGAGATGAATGCTGAGCTC ACGGCCAAGAAGCGCAAGCTGGAAGATGAGTGCTCTGAGCTCAAGAGGGACATTGATGAC CTGGAGCTGACGCTGGCCAAGGTGGAGAAAGAGAAGCATGCCACAGAGAACAAGGTGAAG AACTTGACAGAGGAGATGGCTGGACTGGATGAGATCATCGCCAAGCTGACCAAGGAGAAG AAAGCTCTGCAAGAGGCCCACCAGCAGGCCCTGGATGACCTTCAGGCCGAGGAAGACAAG GTCAACACCCTGACCAAGGCCAAAGTCAAGCTGGAACAGCATGTGGATGATCTGGAAGGG TCTCTGGAGCAGGAGAAGAAGGTGCGCATGGACCTGGAGCGAGCAAAGCGGAAGCTGGAG GGTGACCTAAAGCTGACCCAGGAGAGCATCATGGACCTGGAGAACGACAAGCAGCAGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTGCTGGAGGGCATCCGCATCTGCAGAAAGGGCTTCCCCAACCGCATCCTCTATGGGG ACTTCCGGCAGAGGTATCGCATCCCTGAACCCTGCGGCCATCCCCGAGGGCCAGTTCATT GACAGCAGGAAAGGAGCAGAGAAGCTGCTGGGCTCCCTGGACATTGACCACAACCAGTAC AAGTTTGGCCACACCAAGGTGTTCTTCAAGGCAGGGCTGCTGGGGCTGCTGGAGGAGATG CGGGACGAGAGGTTGAGCCGCATCATCACCCGCATCCAGGCTCAGTCCCGGGGTGTGCTC TCCAGAATGGAGTTCAAGAAGCTGCTGGAACGCAGAGACTCCCTGCTGATAATCCAGTGG AACATTCGGGCCTTCATGAGCGTCAAGAACTGGCCCTGGATGAAGCTCTACTTCAAGATC AAGCCGCTGCTGAAGAGCGCAGAGACAGAGAAGGAGATGGCTACCATGAAGGAGGAGTTT GGGCGCCTCAAAGAGGCGCTGGAGAAGTCAGAGGCCCGCCGCAAGGAGCTAGAGGAGAAG ATGGTGTCCCTGCTGCAGGAGAAGAACGACCTGCAGCTCCAAGTGCAGGCGGAACAAGAC AATCTGGCTGATGCAGAGGAGCGCTGTGACCAGCTAATCAAGAACAAGATCCAGTTGGAG GCCAAGGTGAAGGAGATGACCGAGAGGCTGGAGGACGAGGAGGAGATGAATGCTGAGCTC ACGGCCAAGAAGCGCAAGCTGGAAGATGAGTGCTCTGAGCTCAAGAGGGACATTGATGAC CTGGAGCTGACGCTGGCCAAGGTGGAGAAAGAGAAGCATGCCACAGAGAACAAGGTGAAG AACTTGACAGAGGAGATGGCTGGACTGGATGAGATCATCGCCAAGCTGACCAAGGAGAAG AAAGCTCTGCAAGAGGCCCACCAGCAGGCCCTGGATGACCTTCAGGCCGAGGAAGACAAG GTCAACACCCTGACCAAGGCCAAAGTCAAGCTGGAACAGCATGTGGATGATCTGGAAGGG TCTCTGGAGCAGGAGAAGAAGGTGCGCATGGACCTGGAGCGAGCAAAGCGGAAGCTGGAG GGTGACCTAAAGCTGACCCAGGAGAGCATCATGGACCTGGAGAACGACAAGCAGCAGCTG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 469-587, + strand, RNAz p=0.642326 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 469-587, + strand, RNAz p=0.642326 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 333-587, gnl|bosTau2|chr19 (2451135-2450881) | |
| 333-587, gnl|canFam2|chr5 (37815243-37815515) | |
| 333-587, gnl|danRer3|chr5 (27651838-27651573) | |
| 333-587, gnl|dasNov1|scaffold_199 (100618-100885) | |
| 333-587, gnl|echTel1|scaffold_322471 (10445-10176) | |
| 333-587, gnl|fr1|chrUn (258650371-258650640) | |
| 333-587, gnl|galGal2|chr18 (463788-464058) | |
| 333-587, gnl|hg17|chr17 (10375669-10375941) | |
| 333-587, gnl|Hg17|chr17 (10375933-10375679) | |
| 333-587, gnl|loxAfr1|scaffold_121 (20638-20365) | |
| 333-587, gnl|mm7|chr11 (67268314-67268042) | |
| 333-587, gnl|Mm7|chr11 (67268048-67268302) | |
| 333-587, gnl|monDom2|scaffold_18 (2966934-2966671) | |
| 333-587, gnl|oryCun1|scaffold_207117 (70257-69985) | |
| 333-587, gnl|panTro1|chr19_random (28044551-28044279) | |
| 333-587, gnl|rheMac2|chr16 (10288658-10288930) | |
| 333-587, gnl|rn3|chr10 (53894066-53893794) | |
| 333-587, gnl|tetNig1|chrUn_random (96348425-96348160) | |
| 333-587, gnl|xenTro1|scaffold_270 (125853-125586) | |
| 833-1011, gnl|bosTau2|chr19 (22480714-22480536) | |
| 833-1011, gnl|canFam2|chr5 (37699916-37700078) | |
| 833-1011, gnl|danRer3|chr5 (27952395-27952235) | |
| 833-1011, gnl|dasNov1|scaffold_25150 (35530-35368) | |
| 833-1011, gnl|echTel1|scaffold_311304 (1579-1743) | |
| 833-1011, gnl|fr1|chrUn (258627507-258627669) | |
| 833-1011, gnl|galGal2|chr18 (343995-344157) | |
| 833-1011, gnl|hg17|chr17 (10245311-10245473) | |
| 833-1011, gnl|Hg17|chr17 (10245495-10245317) | |
| 833-1011, gnl|loxAfr1|scaffold_121 (158881-158719) | |
| 833-1011, gnl|mm7|chr11 (67379196-67379034) | |
| 833-1011, gnl|Mm7|chr11 (67379010-67379188) | |
| 833-1011, gnl|monDom2|scaffold_18 (3131807-3131647) | |
| 833-1011, gnl|oryCun1|scaffold_208583 (42202-42040) | |
| 833-1011, gnl|panTro1|chr19_random (28174916-28174754) | |
| 833-1011, gnl|rheMac2|chr16 (10158172-10158334) | |
| 833-1011, gnl|rn3|chr10 (54004998-54004836) | |
| 833-1011, gnl|tetNig1|chrUn_random (96885703-96885541) | |
| 833-1011, gnl|xenTro1|scaffold_270 (211068-210906) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 333-587, gnl|bosTau2|chr19 (2451135-2450881) | |
| 333-587, gnl|canFam2|chr5 (37815243-37815515) | |
| 333-587, gnl|danRer3|chr5 (27651838-27651573) | |
| 333-587, gnl|dasNov1|scaffold_199 (100618-100885) | |
| 333-587, gnl|echTel1|scaffold_322471 (10445-10176) | |
| 333-587, gnl|fr1|chrUn (258650371-258650640) | |
| 333-587, gnl|galGal2|chr18 (463788-464058) | |
| 333-587, gnl|hg17|chr17 (10375669-10375941) | |
| 333-587, gnl|Hg17|chr17 (10375933-10375679) | |
| 333-587, gnl|loxAfr1|scaffold_121 (20638-20365) | |
| 333-587, gnl|mm7|chr11 (67268314-67268042) | |
| 333-587, gnl|Mm7|chr11 (67268048-67268302) | |
| 333-587, gnl|monDom2|scaffold_18 (2966934-2966671) | |
| 333-587, gnl|oryCun1|scaffold_207117 (70257-69985) | |
| 333-587, gnl|panTro1|chr19_random (28044551-28044279) | |
| 333-587, gnl|rheMac2|chr16 (10288658-10288930) | |
| 333-587, gnl|rn3|chr10 (53894066-53893794) | |
| 333-587, gnl|tetNig1|chrUn_random (96348425-96348160) | |
| 333-587, gnl|xenTro1|scaffold_270 (125853-125586) | |
| 833-1011, gnl|bosTau2|chr19 (22480714-22480536) | |
| 833-1011, gnl|canFam2|chr5 (37699916-37700078) | |
| 833-1011, gnl|danRer3|chr5 (27952395-27952235) | |
| 833-1011, gnl|dasNov1|scaffold_25150 (35530-35368) | |
| 833-1011, gnl|echTel1|scaffold_311304 (1579-1743) | |
| 833-1011, gnl|fr1|chrUn (258627507-258627669) | |
| 833-1011, gnl|galGal2|chr18 (343995-344157) | |
| 833-1011, gnl|hg17|chr17 (10245311-10245473) | |
| 833-1011, gnl|Hg17|chr17 (10245495-10245317) | |
| 833-1011, gnl|loxAfr1|scaffold_121 (158881-158719) | |
| 833-1011, gnl|mm7|chr11 (67379196-67379034) | |
| 833-1011, gnl|Mm7|chr11 (67379010-67379188) | |
| 833-1011, gnl|monDom2|scaffold_18 (3131807-3131647) | |
| 833-1011, gnl|oryCun1|scaffold_208583 (42202-42040) | |
| 833-1011, gnl|panTro1|chr19_random (28174916-28174754) | |
| 833-1011, gnl|rheMac2|chr16 (10158172-10158334) | |
| 833-1011, gnl|rn3|chr10 (54004998-54004836) | |
| 833-1011, gnl|tetNig1|chrUn_random (96885703-96885541) | |
| 833-1011, gnl|xenTro1|scaffold_270 (211068-210906) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| che (2.04471) | |
| hea (0.613497) | |
| hlv (0.278513) | |
| nlu (0.191681) | |
| isp (0.150376) | |
| ssp (0.13552) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (2.04471) | |
| hea (0.613497) | |
| hlv (0.278513) | |
| nlu (0.191681) | |
| isp (0.150376) | |
| ssp (0.13552) |