Ss1.1-rche35_g11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAAGAGGGGCAGCCACTGGCAGGTGAGGAGGTGAGCATCCGCAACAGCCCCACGGACA CCATCCTGTTCATTCGGGCTGCGCGCCGGGCCCACTCGGGCACCTACCAGGTGACGTTGC GCATCGAGAATATGGAGGACAAGGCCGAGCTGGTTCTGCAGGTCATTGACAAACCAAGTC CTCCCCAGGATATTCGGGTCATTGAGACATGGGGCTTTAACGTGGCTCTGGAGTGGAAGC CACCCCAGGATGATGGCAACACAGAGCTCTGGGGCTACACGGTTCAGAAAGCTGACAAAA GGACCATGGAGTGGTTCACCGTCTTGGAGCATTACCGCCGTACCCACTGCGTGGTCTCGG AGCTCGTCATTGGCAATGGCTACTACTTCCGGGTCTTCAGCCACAACACAGTGGGGCCCA GCGACAGAGCTTCCACCACCAAGGAGCCTGTCTTCATCCCCAGACCAGCCATCAAATATG AGCCACCCAGCTACAAGGCCCTGGACTTCTCCGAGGCTCCAAGCTTCACCCGTCCCCTAG TGAACCGCTCGGTCATCGCTGGCTATAACACTACCCTCTGCTGTGCTGTCCGGGGGAGCC CCAAGCCCCAGATTTCCTGGTTCAAGAATGGCCTGGACCTGGGCAAAGATGCCCGCTTCC GCATGTTCAGCAAGCAGGGTGTGCTGACTCTGGAGATTAGAAAGCCCTGTCCCTTCGACG GGGGTGTCTATGTCTGCAGGGCCACCAACTTACAAGGCGAGGCGCAGTGTGAGTGCCGCC TGGAGGTGCGAGTGCCTCAGTGACCAGGCTGGCTCCCTGGGATGGCAGGTACAACTGGAT GCCCGCCATGTGCCAGGAGCCTGGAAGGAAGCTGGACAAGCCACCTTCCTGCTGTTAGAT GTGTGTGTGTGCAAGTGTATATTAGACTTTGGGGTGCACCATGAGGGCAGTGTAGTTTTG ACGAGCAGGCATGGGGTGGGGGGGACTCCACACAGACCAAACTGCCCAAGCTCCAGTTGG AAGCTTGCAGATCTATGGGGCAAAGTGTGTGTGGACTCAGGAAATGATGACCCATCTGGC CTGTCATGTTTTCTCAGCACATAAGGGCAATAAAAGACCAGCGCAGTCCTTGCAGATCTA TGGGGCAAAGTGTGTGTGGACTCAGGAAATGATGACCCATCTGGCCTGTCATGTTTTCTC AGCACATAAGGGCAATAAAAGACCAGCGCAGTCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAAGAGGGGCAGCCACTGGCAGGTGAGGAGGTGAGCATCCGCAACAGCCCCACGGACA CCATCCTGTTCATTCGGGCTGCGCGCCGGGCCCACTCGGGCACCTACCAGGTGACGTTGC GCATCGAGAATATGGAGGACAAGGCCGAGCTGGTTCTGCAGGTCATTGACAAACCAAGTC CTCCCCAGGATATTCGGGTCATTGAGACATGGGGCTTTAACGTGGCTCTGGAGTGGAAGC CACCCCAGGATGATGGCAACACAGAGCTCTGGGGCTACACGGTTCAGAAAGCTGACAAAA GGACCATGGAGTGGTTCACCGTCTTGGAGCATTACCGCCGTACCCACTGCGTGGTCTCGG AGCTCGTCATTGGCAATGGCTACTACTTCCGGGTCTTCAGCCACAACACAGTGGGGCCCA GCGACAGAGCTTCCACCACCAAGGAGCCTGTCTTCATCCCCAGACCAGCCATCAAATATG AGCCACCCAGCTACAAGGCCCTGGACTTCTCCGAGGCTCCAAGCTTCACCCGTCCCCTAG TGAACCGCTCGGTCATCGCTGGCTATAACACTACCCTCTGCTGTGCTGTCCGGGGGAGCC CCAAGCCCCAGATTTCCTGGTTCAAGAATGGCCTGGACCTGGGCAAAGATGCCCGCTTCC GCATGTTCAGCAAGCAGGGTGTGCTGACTCTGGAGATTAGAAAGCCCTGTCCCTTCGACG GGGGTGTCTATGTCTGCAGGGCCACCAACTTACAAGGCGAGGCGCAGTGTGAGTGCCGCC TGGAGGTGCGAGTGCCTCAGTGACCAGGCTGGCTCCCTGGGATGGCAGGTACAACTGGAT GCCCGCCATGTGCCAGGAGCCTGGAAGGAAGCTGGACAAGCCACCTTCCTGCTGTTAGAT GTGTGTGTGTGCAAGTGTATATTAGACTTTGGGGTGCACCATGAGGGCAGTGTAGTTTTG ACGAGCAGGCATGGGGTGGGGGGGACTCCACACAGACCAAACTGCCCAAGCTCCAGTTGG AAGCTTGCAGATCTATGGGGCAAAGTGTGTGTGGACTCAGGAAATGATGACCCATCTGGC CTGTCATGTTTTCTCAGCACATAAGGGCAATAAAAGACCAGCGCAGTCCTTGCAGATCTA TGGGGCAAAGTGTGTGTGGACTCAGGAAATGATGACCCATCTGGCCTGTCATGTTTTCTC AGCACATAAGGGCAATAAAAGACCAGCGCAGTCACA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 629-744, + strand, RNAz p=0.943867 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 629-744, + strand, RNAz p=0.943867 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 642-755, - strand, RNAmicro p=0.911394 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 1-168, gnl|bosTau2|chr15 (48991580-48991747) | |
| 1-168, gnl|canFam2|chr1 (109154326-109154110) | |
| 1-168, gnl|canFam2|chr18 (45320909-45320690) | |
| 1-168, gnl|danRer3|chr3 (24487416-24487621) | |
| 1-168, gnl|danRer3|chr7 (22035352-22035134) | |
| 1-168, gnl|dasNov1|scaffold_22856 (4827-5040) | |
| 1-168, gnl|dasNov1|scaffold_22856 (5028-4817) | |
| 1-168, gnl|echTel1|scaffold_323362 (42782-42987) | |
| 1-168, gnl|echTel1|scaffold_323362 (42983-42765) | |
| 1-168, gnl|fr1|chrUn (245700056-245699856) | |
| 1-168, gnl|fr1|chrUn (178251961-178251758) | |
| 1-168, gnl|galGal2|chr32 (114189-114402) | |
| 1-168, gnl|galGal2|chr32 (114390-114183) | |
| 1-168, gnl|hg17|chr11 (47311682-47311900) | |
| 1-168, gnl|Hg17|chr11 (47311851-47311684) | |
| 1-168, gnl|hg17|chr19 (55654178-55654391) | |
| 1-168, gnl|loxAfr1|scaffold_47584 (10274-10060) | |
| 1-168, gnl|loxAfr1|scaffold_47584 (10071-10282) | |
| 1-168, gnl|mm7|chr2 (90985329-90985109) | |
| 1-168, gnl|Mm7|chr2 (90985158-90985325) | |
| 1-168, gnl|mm7|chr7 (40680519-40680312) | |
| 1-168, gnl|monDom2|scaffold_33 (13186716-13186927) | |
| 1-168, gnl|oryCun1|scaffold_158046 (8221-8431) | |
| 1-168, gnl|oryCun1|scaffold_158046 (8419-8204) | |
| 1-168, gnl|panTro1|chr9 (47828568-47828786) | |
| 1-168, gnl|rheMac2|chr14 (24788157-24787942) | |
| 1-168, gnl|rheMac2|chr19 (56668751-56668964) | |
| 1-168, gnl|rn3|chr1 (95061858-95061651) | |
| 1-168, gnl|rn3|chr3 (75391173-75390952) | |
| 1-168, gnl|tetNig1|chr3 (13861916-13861716) | |
| 1-168, gnl|tetNig1|chr5 (7406425-7406218) | |
| 1-168, gnl|xenTro1|scaffold_163 (1553917-1554128) | |
| 1-168, gnl|xenTro1|scaffold_250 (174431-174228) | |
| 303-468, gnl|bosTau2|chr15 (48992282-48992446) | |
| 303-468, gnl|canFam2|chr18 (45321579-45321457) | |
| 303-468, gnl|danRer3|chr7 (22040772-22040650) | |
| 303-468, gnl|dasNov1|scaffold_3175 (72157-72279) | |
| 303-468, gnl|echTel1|scaffold_279622 (38691-38814) | |
| 303-468, gnl|fr1|chrUn (178253362-178253236) | |
| 303-468, gnl|galGal2|chr32 (115130-115019) | |
| 303-468, gnl|hg17|chr11 (47310937-47311059) | |
| 303-468, gnl|Hg17|chr11 (47311104-47310941) | |
| 303-468, gnl|loxAfr1|scaffold_1180 (125846-125957) | |
| 303-468, gnl|mm7|chr2 (90985973-90985851) | |
| 303-468, gnl|Mm7|chr2 (90985803-90985967) | |
| 303-468, gnl|monDom2|scaffold_33 (13185208-13185330) | |
| 303-468, gnl|oryCun1|scaffold_158046 (8961-8839) | |
| 303-468, gnl|panTro1|chr9 (47827823-47827945) | |
| 303-468, gnl|rheMac2|chr14 (24788894-24788772) | |
| 303-468, gnl|rn3|chr3 (75391837-75391715) | |
| 303-468, gnl|tetNig1|chr5 (7407773-7407653) | |
| 303-468, gnl|xenTro1|scaffold_1085 (63730-63841) | |
| 604-792, gnl|bosTau2|chr15 (48992942-48993130) | |
| 604-792, gnl|canFam2|chr18 (45322289-45322086) | |
| 604-792, gnl|danRer3|chr7 (22043371-22043168) | |
| 604-792, gnl|dasNov1|scaffold_3175 (70749-70952) | |
| 604-792, gnl|echTel1|scaffold_323362 (44327-44134) | |
| 604-792, gnl|fr1|chrUn (178253879-178253684) | |
| 604-792, gnl|galGal2|chr32 (116369-116172) | |
| 604-792, gnl|hg17|chr11 (47310193-47310396) | |
| 604-792, gnl|Hg17|chr11 (47310387-47310199) | |
| 604-792, gnl|loxAfr1|scaffold_47584 (6456-6650) | |
| 604-792, gnl|mm7|chr2 (90986646-90986443) | |
| 604-792, gnl|Mm7|chr2 (90986450-90986638) | |
| 604-792, gnl|monDom2|scaffold_33 (13184440-13184641) | |
| 604-792, gnl|oryCun1|scaffold_158046 (9621-9423) | |
| 604-792, gnl|panTro1|chr9 (47827079-47827282) | |
| 604-792, gnl|rheMac2|chr14 (24789643-24789440) | |
| 604-792, gnl|rn3|chr3 (75392525-75392322) | |
| 604-792, gnl|tetNig1|chr5 (7408235-7408042) | |
| 604-792, gnl|xenTro1|scaffold_1085 (62003-62199) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-168, gnl|bosTau2|chr15 (48991580-48991747) | |
| 1-168, gnl|canFam2|chr1 (109154326-109154110) | |
| 1-168, gnl|canFam2|chr18 (45320909-45320690) | |
| 1-168, gnl|danRer3|chr3 (24487416-24487621) | |
| 1-168, gnl|danRer3|chr7 (22035352-22035134) | |
| 1-168, gnl|dasNov1|scaffold_22856 (4827-5040) | |
| 1-168, gnl|dasNov1|scaffold_22856 (5028-4817) | |
| 1-168, gnl|echTel1|scaffold_323362 (42782-42987) | |
| 1-168, gnl|echTel1|scaffold_323362 (42983-42765) | |
| 1-168, gnl|fr1|chrUn (245700056-245699856) | |
| 1-168, gnl|fr1|chrUn (178251961-178251758) | |
| 1-168, gnl|galGal2|chr32 (114189-114402) | |
| 1-168, gnl|galGal2|chr32 (114390-114183) | |
| 1-168, gnl|hg17|chr11 (47311682-47311900) | |
| 1-168, gnl|Hg17|chr11 (47311851-47311684) | |
| 1-168, gnl|hg17|chr19 (55654178-55654391) | |
| 1-168, gnl|loxAfr1|scaffold_47584 (10274-10060) | |
| 1-168, gnl|loxAfr1|scaffold_47584 (10071-10282) | |
| 1-168, gnl|mm7|chr2 (90985329-90985109) | |
| 1-168, gnl|Mm7|chr2 (90985158-90985325) | |
| 1-168, gnl|mm7|chr7 (40680519-40680312) | |
| 1-168, gnl|monDom2|scaffold_33 (13186716-13186927) | |
| 1-168, gnl|oryCun1|scaffold_158046 (8221-8431) | |
| 1-168, gnl|oryCun1|scaffold_158046 (8419-8204) | |
| 1-168, gnl|panTro1|chr9 (47828568-47828786) | |
| 1-168, gnl|rheMac2|chr14 (24788157-24787942) | |
| 1-168, gnl|rheMac2|chr19 (56668751-56668964) | |
| 1-168, gnl|rn3|chr1 (95061858-95061651) | |
| 1-168, gnl|rn3|chr3 (75391173-75390952) | |
| 1-168, gnl|tetNig1|chr3 (13861916-13861716) | |
| 1-168, gnl|tetNig1|chr5 (7406425-7406218) | |
| 1-168, gnl|xenTro1|scaffold_163 (1553917-1554128) | |
| 1-168, gnl|xenTro1|scaffold_250 (174431-174228) | |
| 303-468, gnl|bosTau2|chr15 (48992282-48992446) | |
| 303-468, gnl|canFam2|chr18 (45321579-45321457) | |
| 303-468, gnl|danRer3|chr7 (22040772-22040650) | |
| 303-468, gnl|dasNov1|scaffold_3175 (72157-72279) | |
| 303-468, gnl|echTel1|scaffold_279622 (38691-38814) | |
| 303-468, gnl|fr1|chrUn (178253362-178253236) | |
| 303-468, gnl|galGal2|chr32 (115130-115019) | |
| 303-468, gnl|hg17|chr11 (47310937-47311059) | |
| 303-468, gnl|Hg17|chr11 (47311104-47310941) | |
| 303-468, gnl|loxAfr1|scaffold_1180 (125846-125957) | |
| 303-468, gnl|mm7|chr2 (90985973-90985851) | |
| 303-468, gnl|Mm7|chr2 (90985803-90985967) | |
| 303-468, gnl|monDom2|scaffold_33 (13185208-13185330) | |
| 303-468, gnl|oryCun1|scaffold_158046 (8961-8839) | |
| 303-468, gnl|panTro1|chr9 (47827823-47827945) | |
| 303-468, gnl|rheMac2|chr14 (24788894-24788772) | |
| 303-468, gnl|rn3|chr3 (75391837-75391715) | |
| 303-468, gnl|tetNig1|chr5 (7407773-7407653) | |
| 303-468, gnl|xenTro1|scaffold_1085 (63730-63841) | |
| 604-792, gnl|bosTau2|chr15 (48992942-48993130) | |
| 604-792, gnl|canFam2|chr18 (45322289-45322086) | |
| 604-792, gnl|danRer3|chr7 (22043371-22043168) | |
| 604-792, gnl|dasNov1|scaffold_3175 (70749-70952) | |
| 604-792, gnl|echTel1|scaffold_323362 (44327-44134) | |
| 604-792, gnl|fr1|chrUn (178253879-178253684) | |
| 604-792, gnl|galGal2|chr32 (116369-116172) | |
| 604-792, gnl|hg17|chr11 (47310193-47310396) | |
| 604-792, gnl|Hg17|chr11 (47310387-47310199) | |
| 604-792, gnl|loxAfr1|scaffold_47584 (6456-6650) | |
| 604-792, gnl|mm7|chr2 (90986646-90986443) | |
| 604-792, gnl|Mm7|chr2 (90986450-90986638) | |
| 604-792, gnl|monDom2|scaffold_33 (13184440-13184641) | |
| 604-792, gnl|oryCun1|scaffold_158046 (9621-9423) | |
| 604-792, gnl|panTro1|chr9 (47827079-47827282) | |
| 604-792, gnl|rheMac2|chr14 (24789643-24789440) | |
| 604-792, gnl|rn3|chr3 (75392525-75392322) | |
| 604-792, gnl|tetNig1|chr5 (7408235-7408042) | |
| 604-792, gnl|xenTro1|scaffold_1085 (62003-62199) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| hlv (4.59546) | |
| hea (0.817996) | |
| che (0.68157) | |
| eru (0.120048) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (4.59546) | |
| hea (0.817996) | |
| che (0.68157) | |
| eru (0.120048) |