Ss1.1-rche_0449.5
|
ACTCCCTTTTATTTGGTGCCACAGTTGGTGACAAGGATTTGCCATTTCCCACCAAAATGT
GGGAGCTCTTACTTAGATCTCACTACCTTAAATGAAGAATAAGGAAATGCAATTATGATT
GGTTTTCTAAAGATGATGTTACTATGGTGAGAATCTTTTTTTTTTTTTTTAATGCCAATT
GAGAGGTGTGATAAGCTCACATCTTCCCCTTTCATGTAACGATTTATGAGAACTGTGGAA
TGTGTAAAACAAACTGTTGAAATCCATGGGCAGGGAGGGAGAAAGCCCTTCTAAAGCCTA
CAGTTCTGTATCCGGACTCCCGACTTTCTCAGCCTACAGATTATTAGAGGACATTCGTGC
ATGCTGGGTGTGGAAGGAAAGGCATTTGTAACGTACCCGTGGAATTTCTCCATTTCAGAG
ATGATTCTATGATAGTGCCTTGGAAAGTTGATGCAGCATTTTTGCCTTTCCAAACAATAT
TTATCACCACTGCTTTTTGCATATTATCACAGATGGATTGTCTGGAATACTTTTCTTCAA
AGGGAGTTTGTTATACACAAGCTATAATGTATTATAGAGTTAAAGAAGAAAGCTCTAAAG
GTTTCAGAAAATCTTGATGAGCAGATGATCAGCATCTAAAACCTCTTCTAGACCATTGCT
CAGTGTATATGTATTGATTCTTGATACAAAACAGCATGCCCTCCAACCCATGCACTTTCT
TAAAAGAAAATAAAGTCTTATTAGCAGACTATTAATGTAATTTCTAGGTTCTAGAAAATG
CTGATTCTCATTACCCCATTCACTTGGGGGCACCAGCTATTTTGTTGCTTGGATTTCCCC
CAGATTTCTCTATTTGTAGGAGACGTTTTTCCTATGAGGAATATAATGAATATTATCTGG
TTACTGTTTGGCAATGAAAATTCTCTCATGTGTGTGATACACAAGTGGTAGCCAGGGCAT
CTTCAAGTTGGGAAAAGAAATTTTTCCTTTCAGTTGTTCAATTTAAAATAAATTTTATTC
TGGAGGTTCAGAGTCAACATTACGAGTTGTTTTACCGTGTTTAGAGTTCAAGTTGTCTTG
GATACAGTATTTCTTTTGAAAATGAATTTTTCTTTTGTGATCTTTTAAAGGTTGCACCAA
TTATGCTTCATGCGTTGTTACATCTTCATCTGATTAGTATATGTCTAGTTCATTTTCAAT
AAATACATTGCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACTCCCTTTTATTTGGTGCCACAGTTGGTGACAAGGATTTGCCATTTCCCACCAAAATGT
GGGAGCTCTTACTTAGATCTCACTACCTTAAATGAAGAATAAGGAAATGCAATTATGATT
GGTTTTCTAAAGATGATGTTACTATGGTGAGAATCTTTTTTTTTTTTTTTAATGCCAATT
GAGAGGTGTGATAAGCTCACATCTTCCCCTTTCATGTAACGATTTATGAGAACTGTGGAA
TGTGTAAAACAAACTGTTGAAATCCATGGGCAGGGAGGGAGAAAGCCCTTCTAAAGCCTA
CAGTTCTGTATCCGGACTCCCGACTTTCTCAGCCTACAGATTATTAGAGGACATTCGTGC
ATGCTGGGTGTGGAAGGAAAGGCATTTGTAACGTACCCGTGGAATTTCTCCATTTCAGAG
ATGATTCTATGATAGTGCCTTGGAAAGTTGATGCAGCATTTTTGCCTTTCCAAACAATAT
TTATCACCACTGCTTTTTGCATATTATCACAGATGGATTGTCTGGAATACTTTTCTTCAA
AGGGAGTTTGTTATACACAAGCTATAATGTATTATAGAGTTAAAGAAGAAAGCTCTAAAG
GTTTCAGAAAATCTTGATGAGCAGATGATCAGCATCTAAAACCTCTTCTAGACCATTGCT
CAGTGTATATGTATTGATTCTTGATACAAAACAGCATGCCCTCCAACCCATGCACTTTCT
TAAAAGAAAATAAAGTCTTATTAGCAGACTATTAATGTAATTTCTAGGTTCTAGAAAATG
CTGATTCTCATTACCCCATTCACTTGGGGGCACCAGCTATTTTGTTGCTTGGATTTCCCC
CAGATTTCTCTATTTGTAGGAGACGTTTTTCCTATGAGGAATATAATGAATATTATCTGG
TTACTGTTTGGCAATGAAAATTCTCTCATGTGTGTGATACACAAGTGGTAGCCAGGGCAT
CTTCAAGTTGGGAAAAGAAATTTTTCCTTTCAGTTGTTCAATTTAAAATAAATTTTATTC
TGGAGGTTCAGAGTCAACATTACGAGTTGTTTTACCGTGTTTAGAGTTCAAGTTGTCTTG
GATACAGTATTTCTTTTGAAAATGAATTTTTCTTTTGTGATCTTTTAAAGGTTGCACCAA
TTATGCTTCATGCGTTGTTACATCTTCATCTGATTAGTATATGTCTAGTTCATTTTCAAT
AAATACATTGCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
14-648, gnl|bosTau2|chr12 (27190274-27189647) |
|
14-648, gnl|Hg17|chr13 (74758038-74757368) |
|
14-648, gnl|Mm7|chr14 (95855978-95855333) |
| |
|
682-1212, gnl|bosTau2|chr12 (27189582-27189068) |
|
682-1212, gnl|canFam2|chr22 (32056420-32057147) |
|
682-1212, gnl|echTel1|scaffold_313543 (1839-2566) |
|
682-1212, gnl|hg17|chr13 (74756791-74757482) |
|
682-1212, gnl|Hg17|chr13 (74757335-74756818) |
|
682-1212, gnl|Mm7|chr14 (95855305-95854661) |
|
682-1212, gnl|monDom2|scaffold_8 (12161052-12161793) |
|
682-1212, gnl|panTro1|chr14 (57318824-57319514) |
|
682-1212, gnl|rheMac2|chr17 (55729064-55729755) |
|
682-1212, gnl|rn3|chr15 (85373119-85373839) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
14-648, gnl|bosTau2|chr12 (27190274-27189647) |
|
14-648, gnl|Hg17|chr13 (74758038-74757368) |
|
14-648, gnl|Mm7|chr14 (95855978-95855333) |
| |
|
682-1212, gnl|bosTau2|chr12 (27189582-27189068) |
|
682-1212, gnl|canFam2|chr22 (32056420-32057147) |
|
682-1212, gnl|echTel1|scaffold_313543 (1839-2566) |
|
682-1212, gnl|hg17|chr13 (74756791-74757482) |
|
682-1212, gnl|Hg17|chr13 (74757335-74756818) |
|
682-1212, gnl|Mm7|chr14 (95855305-95854661) |
|
682-1212, gnl|monDom2|scaffold_8 (12161052-12161793) |
|
682-1212, gnl|panTro1|chr14 (57318824-57319514) |
|
682-1212, gnl|rheMac2|chr17 (55729064-55729755) |
|
682-1212, gnl|rn3|chr15 (85373119-85373839) |
|
mas (0.210305) |
|
hea (0.204499) |
|
mgm (0.180343) |
|
liv (0.146284) |
|
spl (0.143184) |
|
che (0.136314) |
|
ste (0.135208) |
|
pla (0.133672) |
|
cov (0.132153) |
|
ova (0.129132) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
mas (0.210305) |
|
hea (0.204499) |
|
mgm (0.180343) |
|
liv (0.146284) |
|
spl (0.143184) |
|
che (0.136314) |
|
ste (0.135208) |
|
pla (0.133672) |
|
cov (0.132153) |
|
ova (0.129132) |
|
pgl (0.118483) |
|
jej (0.0989218) |
