Non-Coding RNA Search

Ss1.1-rcje04_k19.5.5

Sequence:


               
               TCAAAGCAACAGAATCTTGAGCCCTGAAGACATCTCAGATAGCAAGAGGGAGTTTGGGTT
TAAAATGCCCAGTGAATTGCTTCAGAGACAAGAAGCATCTGAGGCAGAGGCAGAGGAAGA
AGAGGACAACCAGCGTGAGGATGATCTGCCTTGGGATGAGGATGAAGTGGAGTGGGAGGA
AGATGTGGTTGACGCTACTCCCCTGGAAGTGTTCTTGCAGTCCCACCACCTGGAAGAATT
CCTTCCTATTTTCATGAGAGAGCAGATTGATCTGGAAGCGCTCTTGCTTTGCTCCGATGA
GGACCTTCAGAGCATACAAATGCAGCTGGGTCCCAGGAAGAAAGTTCTTAATGCCATAAA
CAGAAGGAAGCAGGTGCTACAACAGCCTGGGCAGTTGGTTGACACCAGCCTCTGATGGAG
TATTGGGTCCCTGGGGTGAGTCTGCAGCAGTGGGGTGATGCTGTAGCTCAATGGAAACAT
TCTAGGCATTACCCACTAGTCTACCCAGGATTAGACTGCTGGGTTTCTAGGGTTCTCGGA
GGAGTCTACCCAAGAAAGAGGTCCAAATTCTACTCTTAGAAATACTCTATACCCGTCCAA
ATAAACCACCAGTGAGAAATTCAAGGAGACCTGGGAATAAGAAAATGGCATTTCTCTTTG
ATTATCTTTTTGATCTTTTTGAATATAGAAAGGATTAAATGAATGACAGAAAAGAGGAAA
AAAAAAAACTTTCTTCACTTTCCTAACTCTGGACTTAAAATTGTAATCTCTCATCACACA
CTTAATTTCTGATCCTTAAAGTCTGGGGATTCTAACTCCAGTTCTGGCCTTAGCTCTGTG
GCTTTATCTGTTGGTGGAGACTAAATTTCCTCCATTGGCCTATGGCTTAATGCCCAACTT
GAATGTGTTTAACTCTTCAACAGATGTTTACGTGTGTGTATAAGGAATAGAAATAAGTCT
ATAATACTTCTGACAGGAGGGCAGGTAGAGAGAGAGAAGAATGAAGCAGAATGTATGGTA
CCTGTTATGGACGGAATTTTGTTCTTCTAAAATTCCCATGTTGAAACCCTAACCCTCAAT
GTGACTGTATTTGAAGATAAGACCTTTATTACAGAGGTGATGAAGGTTAATGAGATTGTA
ACGATGGGCTCTAATTCCACATGACTGTTTCTTTTAAGAGGTTGAAACAGTGGCCATGTG
CATGCACAGAGTATGTGATGTGTAAGCAAGGAGGGAAGCCTCGGGAAAAACCAAACCTTC
TATCTCCTTGGATTTCGAGTCTCCAAAACTGTAAGAAAATAAATTTCTATTGTTTAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAAGCAACAGAATCTTGAGCCCTGAAGACATCTCAGATAGCAAGAGGGAGTTTGGGTT
TAAAATGCCCAGTGAATTGCTTCAGAGACAAGAAGCATCTGAGGCAGAGGCAGAGGAAGA
AGAGGACAACCAGCGTGAGGATGATCTGCCTTGGGATGAGGATGAAGTGGAGTGGGAGGA
AGATGTGGTTGACGCTACTCCCCTGGAAGTGTTCTTGCAGTCCCACCACCTGGAAGAATT
CCTTCCTATTTTCATGAGAGAGCAGATTGATCTGGAAGCGCTCTTGCTTTGCTCCGATGA
GGACCTTCAGAGCATACAAATGCAGCTGGGTCCCAGGAAGAAAGTTCTTAATGCCATAAA
CAGAAGGAAGCAGGTGCTACAACAGCCTGGGCAGTTGGTTGACACCAGCCTCTGATGGAG
TATTGGGTCCCTGGGGTGAGTCTGCAGCAGTGGGGTGATGCTGTAGCTCAATGGAAACAT
TCTAGGCATTACCCACTAGTCTACCCAGGATTAGACTGCTGGGTTTCTAGGGTTCTCGGA
GGAGTCTACCCAAGAAAGAGGTCCAAATTCTACTCTTAGAAATACTCTATACCCGTCCAA
ATAAACCACCAGTGAGAAATTCAAGGAGACCTGGGAATAAGAAAATGGCATTTCTCTTTG
ATTATCTTTTTGATCTTTTTGAATATAGAAAGGATTAAATGAATGACAGAAAAGAGGAAA
AAAAAAAACTTTCTTCACTTTCCTAACTCTGGACTTAAAATTGTAATCTCTCATCACACA
CTTAATTTCTGATCCTTAAAGTCTGGGGATTCTAACTCCAGTTCTGGCCTTAGCTCTGTG
GCTTTATCTGTTGGTGGAGACTAAATTTCCTCCATTGGCCTATGGCTTAATGCCCAACTT
GAATGTGTTTAACTCTTCAACAGATGTTTACGTGTGTGTATAAGGAATAGAAATAAGTCT
ATAATACTTCTGACAGGAGGGCAGGTAGAGAGAGAGAAGAATGAAGCAGAATGTATGGTA
CCTGTTATGGACGGAATTTTGTTCTTCTAAAATTCCCATGTTGAAACCCTAACCCTCAAT
GTGACTGTATTTGAAGATAAGACCTTTATTACAGAGGTGATGAAGGTTAATGAGATTGTA
ACGATGGGCTCTAATTCCACATGACTGTTTCTTTTAAGAGGTTGAAACAGTGGCCATGTG
CATGCACAGAGTATGTGATGTGTAAGCAAGGAGGGAAGCCTCGGGAAAAACCAAACCTTC
TATCTCCTTGGATTTCGAGTCTCCAAAACTGTAAGAAAATAAATTTCTATTGTTTAAATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               4-101, - strand, RNAz p=0.584138
               

               
               290-488, + strand, RNAz p=0.860428

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-101, - strand, RNAz p=0.584138
               

               
               290-488, + strand, RNAz p=0.860428

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-798, gnl|bosTau2|chr25 (17641894-17642671)
               

               
               4-798, gnl|Hg17|chr16 (21169219-21170399)
               

               
               4-798, gnl|Mm7|chr7 (116104858-116105553)
               


               
               822-1065, gnl|bosTau2|chr25 (17642660-17642909)
               

               
               822-1065, gnl|Hg17|chr16 (21170354-21170637)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-798, gnl|bosTau2|chr25 (17641894-17642671)
               

               
               4-798, gnl|Hg17|chr16 (21169219-21170399)
               

               
               4-798, gnl|Mm7|chr7 (116104858-116105553)
               


               
               822-1065, gnl|bosTau2|chr25 (17642660-17642909)
               

               
               822-1065, gnl|Hg17|chr16 (21170354-21170637)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pro (0.512033)
               

               
               lin (0.436808)
               

               
               cje (0.165235)
               

               
               kid (0.129735)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               lin (0.436808)
               

               
               cje (0.165235)
               

               
               kid (0.129735)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	4-101, - strand, RNAz p=0.584138
	290-488, + strand, RNAz p=0.860428

	4-798, gnl\|bosTau2\|chr25 (17641894-17642671)
	4-798, gnl\|Hg17\|chr16 (21169219-21170399)
	4-798, gnl\|Mm7\|chr7 (116104858-116105553)

	822-1065, gnl\|bosTau2\|chr25 (17642660-17642909)
	822-1065, gnl\|Hg17\|chr16 (21170354-21170637)

	pro (0.512033)
	lin (0.436808)
	cje (0.165235)
	kid (0.129735)
	cbl (0.114797)
	jej (0.0989218)
	eje (0.0988338)