Non-Coding RNA Search

Ss1.1-rcje05_j21.5

Sequence:


               
               GGAATCTGGCTTTTTGTCAGTTCCCTCGTTTATTTTATTCAGCAAATAGCGATTGCACTC
CTACTCTCTCAGGGCCTGCTGGGATCTTTTGCTGGAGTGGCAGTGGAGGGGGCCATAGCT
TTTTTGTTTACAAATATACAAATATATTTGGTTCTCTTAATGCTTTCAAGGTCATAGGAA
TGCTTACTGCCATCCCTTTGATGACTTTAGGTCCTTTGAGTCAGGAGGTCAGTATCTGAG
CCAACAAAGAGCTAGTGAAAAGTCTTTGAATTGGGCCTTTTCTTTTGAAAATGGAGGTGC
TCCCTGGAGACGGGAATGTATTACTCTGCATTTGAGGGCAGTACCAAGAATCCTGAGTCA
GTATGATTCCTGAACACCTGTAGTGAGTTCAGACACCAGGCTGTCAAGATCTCTGGTTTC
TGAGTTTGGAATAGTGAGTAGCAAGAATGAGAATGTTGAGGGATATCAACCCTATCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATCTGGCTTTTTGTCAGTTCCCTCGTTTATTTTATTCAGCAAATAGCGATTGCACTC
CTACTCTCTCAGGGCCTGCTGGGATCTTTTGCTGGAGTGGCAGTGGAGGGGGCCATAGCT
TTTTTGTTTACAAATATACAAATATATTTGGTTCTCTTAATGCTTTCAAGGTCATAGGAA
TGCTTACTGCCATCCCTTTGATGACTTTAGGTCCTTTGAGTCAGGAGGTCAGTATCTGAG
CCAACAAAGAGCTAGTGAAAAGTCTTTGAATTGGGCCTTTTCTTTTGAAAATGGAGGTGC
TCCCTGGAGACGGGAATGTATTACTCTGCATTTGAGGGCAGTACCAAGAATCCTGAGTCA
GTATGATTCCTGAACACCTGTAGTGAGTTCAGACACCAGGCTGTCAAGATCTCTGGTTTC
TGAGTTTGGAATAGTGAGTAGCAAGAATGAGAATGTTGAGGGATATCAACCCTATCTCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-180, + strand, RNAz p=0.608137

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-180, + strand, RNAz p=0.608137

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-480, gnl|bosTau2|chr23 (17665167-17665649)
               

               
               1-480, gnl|Hg17|chr6 (44196498-44196014)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr23 (17665167-17665649)
               

               
               1-480, gnl|Hg17|chr6 (44196498-44196014)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cut (0.169924)
               

               
               cje (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cje (0.165235)

	1-480, gnl\|bosTau2\|chr23 (17665167-17665649)
	1-480, gnl\|Hg17\|chr6 (44196498-44196014)