Non-Coding RNA Search

Ss1.1-rcje06_h5.5

Sequence:


               
               GCGGCAAGAGTCTCCTGCTGCAAAACGAGCTGAAGAAAGGACCAGCGCTTTTTTTATTTA
TACCTTTTAATCCCCTGGCCGAGAGTCATCCCCTGATAGATGAGATCACCGAAGTGGCCT
TGGAGTACAACAACTGTCATGGGGACCAGGTGGTGGAGCGGCTCCTTCAGCACCTGCGGC
GAGTGGACGCCCCTGTGTTCAAGTCTCTGGCCCCCGAGCCCCCTGCCCGGCTGCTGGACC
CGCCACTGGGGTCGGCGTCCCCCTGCTGCAACACCGTGGTGCTGCCCCAGTGGCACTCCA
TCTCCAGGACCCACAATGTCTGTGAACTATGTGTCAACCAGACAGCCGGCGGTGTCAGGC
CGAGCTCGGTCAGCGTGCCCCAGTGCAGCTTTTTCGATATGGCAGCAGCTCTGGATTCCT
TCTACCTCAAGGAGCAGACCTTTTATCATGTGGCATCAGATAGCATAGAATGCAGCAATT
TTCTAAGTTTCTATAGCCCTTTCAGCTACTACTCTGCATGTTGCAGGACCATCAGCAGGG
GCGGGACGGGCCTCATTGATTCTGAACAAGACGCCTTTGAGTCCCCGACCACTGCGTTTT
CTTCCCTCGAGAAGAAATGCGAGGTCGATCCCCCCAGCTCTGTTCCTCACATTGAGGAGA
ACAGGTATCTTTTTCCCGAACTGGACGTGACTAGCACAAGCTTCACTGGCTTGAGCTGCA
GGACCAACAAGAACCTGAACATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCAAGAGTCTCCTGCTGCAAAACGAGCTGAAGAAAGGACCAGCGCTTTTTTTATTTA
TACCTTTTAATCCCCTGGCCGAGAGTCATCCCCTGATAGATGAGATCACCGAAGTGGCCT
TGGAGTACAACAACTGTCATGGGGACCAGGTGGTGGAGCGGCTCCTTCAGCACCTGCGGC
GAGTGGACGCCCCTGTGTTCAAGTCTCTGGCCCCCGAGCCCCCTGCCCGGCTGCTGGACC
CGCCACTGGGGTCGGCGTCCCCCTGCTGCAACACCGTGGTGCTGCCCCAGTGGCACTCCA
TCTCCAGGACCCACAATGTCTGTGAACTATGTGTCAACCAGACAGCCGGCGGTGTCAGGC
CGAGCTCGGTCAGCGTGCCCCAGTGCAGCTTTTTCGATATGGCAGCAGCTCTGGATTCCT
TCTACCTCAAGGAGCAGACCTTTTATCATGTGGCATCAGATAGCATAGAATGCAGCAATT
TTCTAAGTTTCTATAGCCCTTTCAGCTACTACTCTGCATGTTGCAGGACCATCAGCAGGG
GCGGGACGGGCCTCATTGATTCTGAACAAGACGCCTTTGAGTCCCCGACCACTGCGTTTT
CTTCCCTCGAGAAGAAATGCGAGGTCGATCCCCCCAGCTCTGTTCCTCACATTGAGGAGA
ACAGGTATCTTTTTCCCGAACTGGACGTGACTAGCACAAGCTTCACTGGCTTGAGCTGCA
GGACCAACAAGAACCTGAACATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879699|ref|XP_591200.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879699|ref|XP_591200.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               543-702, - strand, RNAz p=0.961651

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               543-702, - strand, RNAz p=0.961651

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               103-742, gnl|bosTau2|chr25 (9675648-9675009)
               

               
               103-742, gnl|Hg17|chr16 (11693441-11692802)
               

               
               103-742, gnl|Mm7|chr16 (10767773-10767134)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-742, gnl|bosTau2|chr25 (9675648-9675009)
               

               
               103-742, gnl|Hg17|chr16 (11693441-11692802)
               

               
               103-742, gnl|Mm7|chr16 (10767773-10767134)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               cly (0.120642)

	103-742, gnl\|bosTau2\|chr25 (9675648-9675009)
	103-742, gnl\|Hg17\|chr16 (11693441-11692802)
	103-742, gnl\|Mm7\|chr16 (10767773-10767134)