Non-Coding RNA Search

Ss1.1-rcje08_d5.5

Sequence:


               
               GAAACACGGCAAGAGATCATATTTGAAATATGGCTCAGAGTGACTTCCTCTATCCAGAGA
ACCCAAGAAGGCGGCAAGAAGTAAACCGTCTTCACCAGGAGCTCCTTGACTGCTTATCTG
ACAGCTTCCAGGCCACCAATAAGCTGATTGGAGTTTTAAATATGCACTTAGGGTGCAGGC
TGGCCTCCATTGAAATGAAAAGAGATGGGACCATCAAAGAAAACTGTGATATCATCATTC
AAGCCATGATGAAAATCCAAAAAGAATTGCAAAAGGTTGATGAAGCTCTAAAAGATAAGC
TAGAGCCAACCCTTTATAGAAAACTTCAGGATATTAAGGAAAGAGAAACCGAGAAAATTG
CCATAGTACAAAAGGTTATTTCAGTCATCTTGGGAGAAGCTACTTCTGCAGCCAGCGCAG
TGGCTGTTAAACTTGTGGGCTCAAATGTCACAACTGGCATCATTAACAAGTTGGTCACTG
TGTTAGCTCAAATTGGTGCATCGCTCCTTGGTAGCATAGGAGTTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACACGGCAAGAGATCATATTTGAAATATGGCTCAGAGTGACTTCCTCTATCCAGAGA
ACCCAAGAAGGCGGCAAGAAGTAAACCGTCTTCACCAGGAGCTCCTTGACTGCTTATCTG
ACAGCTTCCAGGCCACCAATAAGCTGATTGGAGTTTTAAATATGCACTTAGGGTGCAGGC
TGGCCTCCATTGAAATGAAAAGAGATGGGACCATCAAAGAAAACTGTGATATCATCATTC
AAGCCATGATGAAAATCCAAAAAGAATTGCAAAAGGTTGATGAAGCTCTAAAAGATAAGC
TAGAGCCAACCCTTTATAGAAAACTTCAGGATATTAAGGAAAGAGAAACCGAGAAAATTG
CCATAGTACAAAAGGTTATTTCAGTCATCTTGGGAGAAGCTACTTCTGCAGCCAGCGCAG
TGGCTGTTAAACTTGTGGGCTCAAATGTCACAACTGGCATCATTAACAAGTTGGTCACTG
TGTTAGCTCAAATTGGTGCATCGCTCCTTGGTAGCATAGGAGTTGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26347439|dbj|BAC37368.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26347439|dbj|BAC37368.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-370, - strand, RNAz p=0.586361

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-370, - strand, RNAz p=0.586361

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-528, gnl|bosTau2|chr5 (57423873-57424388)
               

               
               12-528, gnl|Hg17|chr12 (14850899-14850383)
               

               
               12-528, gnl|Mm7|chr6 (136856446-136855932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-528, gnl|bosTau2|chr5 (57423873-57424388)
               

               
               12-528, gnl|Hg17|chr12 (14850899-14850383)
               

               
               12-528, gnl|Mm7|chr6 (136856446-136855932)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               cje (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               cje (0.165235)

	12-528, gnl\|bosTau2\|chr5 (57423873-57424388)
	12-528, gnl\|Hg17\|chr12 (14850899-14850383)
	12-528, gnl\|Mm7\|chr6 (136856446-136855932)