Non-Coding RNA Search

Ss1.1-rcje09_h5.5

Sequence:


               
               GTGGACCCAAGTGTCATGTAAGTTCCTCCCGTCAGCCCAAGGCCAGCTTTCATCTTTTCA
GAAAGGCACATCCGTGGCCTGCAAGGAAGGGTTCAGTCTTGTCACTGCACATTGCTGGAA
TCCTCCCAGAGTCATGCTTTGGCCAGCAAGGCTGACCCATCCCGCCCTGGGCTCAGCACA
CTGCAGTGGCTCAGCGTGGTCCTGGGAGTGCCAGGTGCCTTCAGGGCACTCAGAAGCAGA
GGAAGCACTCTTACCCATTCGGCCTCTGGAGGGGGCATAAGACAAAAAATAAGAAACCTC
ATTCTCTTGCTTGTCCGCAAAGCATGTGAGTTCTGGCCTTAGCTCTCCTGGTGGGCCTAG
GATGAGACCTTCCTGCTTGGTGTGAAACCAATGATCCTACTTGCTGTAGAGGAGTGGTTC
ATCCGAGCTAGATTAACCCAACAGGTGAGGTCCCTGCATTTCACCCCTGGGCCTCCATCC
CTGGGCCCCTTGGAGCACGGCCAGAGATGCCAGCAGCTTCTATTGTCCTCAGTCCTGCAA
ACCAAAATCCTGCCCTTCACGGACCTCACCCAGAACCTGGGGCTTGGGCTCACCGTTGCC
TCAGGGTAGTGTTTTGCTTCATTGTTACGTTGCCTGGAAATGGACAGTCTTCCAAGCATG
TTGGGCTAAGTTCCCAGCTCTTTCTTGTAGCCAGTCTTGTCACTGTCCATCCAGGTGGCG
GTTTCAGGTGGAATTAAACACGGCACATGCAGAGGGGTGGGGCAGTGCGTGTGGAAAGTT
CTGGAAGAGGCCTCTTCCCTCCAGAGCCCCAACTTTCTTGGCTGCATGAAGATTTTCTGT
AAAATCAGGATTGTGGCCAGTTTCTGTGGCTGGAAAGATGCATAATTCAATTGGCTGGTA
CTGAAAGGGAAGGGAGGGGGTGGGGATGGGTGTGGCAGTGTATGGTGTGTGATTTTTTTG
TCTTTTCCTTAATGATGGGGAGCACGGAGAAAGGCATGGGTCTCCCCAAACAGTCTTGTG
CAGCTGCAGGCACTGTGCCTACTGTCCAGAACCCTTCATGTCCCTGTGGCTGTGTGGCTG
CTGCTTCTGTAAAAATAAAAGTGTGACCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGACCCAAGTGTCATGTAAGTTCCTCCCGTCAGCCCAAGGCCAGCTTTCATCTTTTCA
GAAAGGCACATCCGTGGCCTGCAAGGAAGGGTTCAGTCTTGTCACTGCACATTGCTGGAA
TCCTCCCAGAGTCATGCTTTGGCCAGCAAGGCTGACCCATCCCGCCCTGGGCTCAGCACA
CTGCAGTGGCTCAGCGTGGTCCTGGGAGTGCCAGGTGCCTTCAGGGCACTCAGAAGCAGA
GGAAGCACTCTTACCCATTCGGCCTCTGGAGGGGGCATAAGACAAAAAATAAGAAACCTC
ATTCTCTTGCTTGTCCGCAAAGCATGTGAGTTCTGGCCTTAGCTCTCCTGGTGGGCCTAG
GATGAGACCTTCCTGCTTGGTGTGAAACCAATGATCCTACTTGCTGTAGAGGAGTGGTTC
ATCCGAGCTAGATTAACCCAACAGGTGAGGTCCCTGCATTTCACCCCTGGGCCTCCATCC
CTGGGCCCCTTGGAGCACGGCCAGAGATGCCAGCAGCTTCTATTGTCCTCAGTCCTGCAA
ACCAAAATCCTGCCCTTCACGGACCTCACCCAGAACCTGGGGCTTGGGCTCACCGTTGCC
TCAGGGTAGTGTTTTGCTTCATTGTTACGTTGCCTGGAAATGGACAGTCTTCCAAGCATG
TTGGGCTAAGTTCCCAGCTCTTTCTTGTAGCCAGTCTTGTCACTGTCCATCCAGGTGGCG
GTTTCAGGTGGAATTAAACACGGCACATGCAGAGGGGTGGGGCAGTGCGTGTGGAAAGTT
CTGGAAGAGGCCTCTTCCCTCCAGAGCCCCAACTTTCTTGGCTGCATGAAGATTTTCTGT
AAAATCAGGATTGTGGCCAGTTTCTGTGGCTGGAAAGATGCATAATTCAATTGGCTGGTA
CTGAAAGGGAAGGGAGGGGGTGGGGATGGGTGTGGCAGTGTATGGTGTGTGATTTTTTTG
TCTTTTCCTTAATGATGGGGAGCACGGAGAAAGGCATGGGTCTCCCCAAACAGTCTTGTG
CAGCTGCAGGCACTGTGCCTACTGTCCAGAACCCTTCATGTCCCTGTGGCTGTGTGGCTG
CTGCTTCTGTAAAAATAAAAGTGTGACCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               359-473, - strand, RNAz p=0.951092

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-473, - strand, RNAz p=0.951092

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-1114, gnl|bosTau2|chr3 (60289710-60290779)
               

               
               12-1114, gnl|Hg17|chr1 (55028375-55027326)
               

               
               12-1114, gnl|Mm7|chr4 (105964540-105965549)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-1114, gnl|bosTau2|chr3 (60289710-60290779)
               

               
               12-1114, gnl|Hg17|chr1 (55028375-55027326)
               

               
               12-1114, gnl|Mm7|chr4 (105964540-105965549)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               cli (0.458435)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               eru (0.360144)
               

               
               eli (0.303628)
               

               
               eep (0.245128)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               eru (0.360144)
               

               
               eli (0.303628)
               

               
               eep (0.245128)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	12-1114, gnl\|bosTau2\|chr3 (60289710-60290779)
	12-1114, gnl\|Hg17\|chr1 (55028375-55027326)
	12-1114, gnl\|Mm7\|chr4 (105964540-105965549)

	cli (0.458435)
	cov (0.396458)
	fcc (0.39557)
	eru (0.360144)
	eli (0.303628)
	eep (0.245128)
	fli (0.202881)
	jej (0.197844)
	fbs (0.175346)
	sin (0.174948)
	fhi (0.169578)
	cje (0.165235)
	cag (0.151194)
	hyp (0.142837)
	cst (0.140036)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	bla (0.124347)
	cly (0.120642)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)