Non-Coding RNA Search

Ss1.1-rcje11_c8.5

Sequence:


               
               TGTAAGTGATTTCTTCCCTTGGAAAATAAGCCAAATTATGATTAGATGCAGATAACTAAA
TCATGTTTTGTTTTTGCTTTTTAATCAGTTCTTTAAAATATGGGAGTTGAGAGGTAGGGT
GGACTTGTTTCCGCAGAGTCATTCCCAGAGCTCCAGTAAGTCACACGTCTGAGAGTGAGT
CAGGTCGTTGGAGGGTGGTTCTGAATCAGGCTGCGGTTATGTGGAAGGAGACAGGGTTCC
ATCGGGGTCGGTTGGGTTTTTCAGAAAGAGGATGAAGTCGATACTTTTAAATGATTTAGG
GCAGGTAGATGCTTCTTTAATTATGTAGGCCTCTCTTTTTTTCACAAGTAATGGGGAAAT
TGTTTAAAACCCCACAAATATGAAAATAACTTTTCTACGTCTTCTCCCTCCTTTTCTTCC
CCCAGCTTGTTCTTTGGAAATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAAGTGATTTCTTCCCTTGGAAAATAAGCCAAATTATGATTAGATGCAGATAACTAAA
TCATGTTTTGTTTTTGCTTTTTAATCAGTTCTTTAAAATATGGGAGTTGAGAGGTAGGGT
GGACTTGTTTCCGCAGAGTCATTCCCAGAGCTCCAGTAAGTCACACGTCTGAGAGTGAGT
CAGGTCGTTGGAGGGTGGTTCTGAATCAGGCTGCGGTTATGTGGAAGGAGACAGGGTTCC
ATCGGGGTCGGTTGGGTTTTTCAGAAAGAGGATGAAGTCGATACTTTTAAATGATTTAGG
GCAGGTAGATGCTTCTTTAATTATGTAGGCCTCTCTTTTTTTCACAAGTAATGGGGAAAT
TGTTTAAAACCCCACAAATATGAAAATAACTTTTCTACGTCTTCTCCCTCCTTTTCTTCC
CCCAGCTTGTTCTTTGGAAATCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               336-444, - strand, RNAz p=0.889834

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               336-444, - strand, RNAz p=0.889834

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-444, gnl|bosTau2|chr19 (49891686-49891252)
               

               
               10-444, gnl|Hg17|chr17 (72250668-72251093)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-444, gnl|bosTau2|chr19 (49891686-49891252)
               

               
               10-444, gnl|Hg17|chr17 (72250668-72251093)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               cst (0.140036)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               cst (0.140036)

	10-444, gnl\|bosTau2\|chr19 (49891686-49891252)
	10-444, gnl\|Hg17\|chr17 (72250668-72251093)