Non-Coding RNA Search

Ss1.1-rcje11_d24.5

Sequence:


               
               TCCATTTGTAGACAGAGATTTAACAGAGTTTTCAGAATTGGAATATTCAGAAATGGGATC
ATCATTCAGTGGCTCTCCAAAAGCAGAATCTGCCATAGCAGTGGCAAATCCTAAAGAAGA
AGTAATTGTGAAGAATAAAGATGAAAAAGAGCCCTTGGTTAGTAATAACGCTGTTCGTAA
AGAGTTACCTATAACCCTTACCGAGCCAGTTACAGAAGAGGACAGAGTTATGTCTCCAGG
AAAAACAAAGGACAGTTTTAATGAAAAGGGAATTGCAGCAGAAGCTCCTATGAAGGAGGA
ATATGCCGACTTCAAACCCTTTGAGCGAGTATGGGAAGTAAAAGATACTCATAAGCAAGG
TAGTGATGTTTTGGCTGCTGGAGGTACTGTAGAGAGCAAATTGGGAAGTAAAGTGGATAA
GAAATGCTTTTCAGATAGCCTTGAACAAACAAATCATGAGAAAGATAGTGAAAGCAGCAA
TGATGATGCTTCTTTTCCCAGTACGCCGGAAGCTGTAAAAGATGGTTCAGGAGCATATAT
TACATGTGCTCCCTTTAACCCAACAGCAACTGAAAATGTTTCAACAAACATTTTTCCTTT
GTTGGAAGATCGTACTTCAGAAAATAAGACAGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCATTTGTAGACAGAGATTTAACAGAGTTTTCAGAATTGGAATATTCAGAAATGGGATC
ATCATTCAGTGGCTCTCCAAAAGCAGAATCTGCCATAGCAGTGGCAAATCCTAAAGAAGA
AGTAATTGTGAAGAATAAAGATGAAAAAGAGCCCTTGGTTAGTAATAACGCTGTTCGTAA
AGAGTTACCTATAACCCTTACCGAGCCAGTTACAGAAGAGGACAGAGTTATGTCTCCAGG
AAAAACAAAGGACAGTTTTAATGAAAAGGGAATTGCAGCAGAAGCTCCTATGAAGGAGGA
ATATGCCGACTTCAAACCCTTTGAGCGAGTATGGGAAGTAAAAGATACTCATAAGCAAGG
TAGTGATGTTTTGGCTGCTGGAGGTACTGTAGAGAGCAAATTGGGAAGTAAAGTGGATAA
GAAATGCTTTTCAGATAGCCTTGAACAAACAAATCATGAGAAAGATAGTGAAAGCAGCAA
TGATGATGCTTCTTTTCCCAGTACGCCGGAAGCTGTAAAAGATGGTTCAGGAGCATATAT
TACATGTGCTCCCTTTAACCCAACAGCAACTGAAAATGTTTCAACAAACATTTTTCCTTT
GTTGGAAGATCGTACTTCAGAAAATAAGACAGATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38488991|tpg|DAA01975.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38488991|tpg|DAA01975.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               354-473, - strand, RNAz p=0.578556
               

               
               514-636, + strand, RNAz p=0.899139

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               354-473, - strand, RNAz p=0.578556
               

               
               514-636, + strand, RNAz p=0.899139

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-636, gnl|bosTau2|chr11 (27917757-27917119)
               

               
               1-636, gnl|canFam2|chr10 (59080529-59081918)
               

               
               1-636, gnl|echTel1|scaffold_318688 (33202-34558)
               

               
               1-636, gnl|galGal2|chr3 (2444702-2443283)
               

               
               1-636, gnl|hg17|chr2 (55164686-55166075)
               

               
               1-636, gnl|Hg17|chr2 (55166040-55165405)
               

               
               1-636, gnl|loxAfr1|scaffold_5382 (55633-54237)
               

               
               1-636, gnl|mm7|chr11 (29659989-29658618)
               

               
               1-636, gnl|Mm7|chr11 (29658651-29659271)
               

               
               1-636, gnl|monDom2|scaffold_1 (17878580-17880008)
               

               
               1-636, gnl|oryCun1|scaffold_169084 (2206-812)
               

               
               1-636, gnl|panTro1|chr12 (57293741-57295131)
               

               
               1-636, gnl|rheMac2|chr13 (55320816-55322205)
               

               
               1-636, gnl|rn3|chr14 (110766357-110765001)
               

               
               1-636, gnl|xenTro1|scaffold_234 (846096-844857)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr11 (27917757-27917119)
               

               
               1-636, gnl|canFam2|chr10 (59080529-59081918)
               

               
               1-636, gnl|echTel1|scaffold_318688 (33202-34558)
               

               
               1-636, gnl|galGal2|chr3 (2444702-2443283)
               

               
               1-636, gnl|hg17|chr2 (55164686-55166075)
               

               
               1-636, gnl|Hg17|chr2 (55166040-55165405)
               

               
               1-636, gnl|loxAfr1|scaffold_5382 (55633-54237)
               

               
               1-636, gnl|mm7|chr11 (29659989-29658618)
               

               
               1-636, gnl|Mm7|chr11 (29658651-29659271)
               

               
               1-636, gnl|monDom2|scaffold_1 (17878580-17880008)
               

               
               1-636, gnl|oryCun1|scaffold_169084 (2206-812)
               

               
               1-636, gnl|panTro1|chr12 (57293741-57295131)
               

               
               1-636, gnl|rheMac2|chr13 (55320816-55322205)
               

               
               1-636, gnl|rn3|chr14 (110766357-110765001)
               

               
               1-636, gnl|xenTro1|scaffold_234 (846096-844857)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               spc (0.340097)
               

               
               cje (0.165235)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.340097)
               

               
               cje (0.165235)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	354-473, - strand, RNAz p=0.578556
	514-636, + strand, RNAz p=0.899139

	1-636, gnl\|bosTau2\|chr11 (27917757-27917119)
	1-636, gnl\|canFam2\|chr10 (59080529-59081918)
	1-636, gnl\|echTel1\|scaffold_318688 (33202-34558)
	1-636, gnl\|galGal2\|chr3 (2444702-2443283)
	1-636, gnl\|hg17\|chr2 (55164686-55166075)
	1-636, gnl\|Hg17\|chr2 (55166040-55165405)
	1-636, gnl\|loxAfr1\|scaffold_5382 (55633-54237)
	1-636, gnl\|mm7\|chr11 (29659989-29658618)
	1-636, gnl\|Mm7\|chr11 (29658651-29659271)
	1-636, gnl\|monDom2\|scaffold_1 (17878580-17880008)
	1-636, gnl\|oryCun1\|scaffold_169084 (2206-812)
	1-636, gnl\|panTro1\|chr12 (57293741-57295131)
	1-636, gnl\|rheMac2\|chr13 (55320816-55322205)
	1-636, gnl\|rn3\|chr14 (110766357-110765001)
	1-636, gnl\|xenTro1\|scaffold_234 (846096-844857)

	spc (0.340097)
	cje (0.165235)
	ssp (0.13552)
	sug (0.127291)
	thg (0.126791)
	med (0.116252)
	ecc (0.115035)