Ss1.1-rcje11_j16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTGGGAGACGTGGTGATATGTGTTCCAATTATGAAAAACAGTTGCAAGGAATTCATAT TCAGGAGGCTGAAACAAGAGACCAGGTGAAAAAATTACAGGTGATGCTAAGGCAAGCAAA TGACCAGTTAGAGAAGACAATGAAAGATAAACAGGAACTGGAAGACTTCATAAAGCAGAG CACTGAAGATGCAAGTCATCAGATCTCTGCACTTGTGCTAAGAGCCCAAGCATCTGAGAT CTTACTTGAAGAGTTACAACGGGGCTTCTCCCAGGCAAAGAGGGATGTTCAGGAACAGAT GGCAGTGCTGATGCAGTCCCGGGAGCAGGTTTCGGAAGAGCTGGTGAGGTTACAGAAAGA TAATGACAGTCTTCAGGGAAAGCACAGCTTGCATGTGTCATTACAGCAGGCGGAAGACTT CATTCTCCCGGACACCATAGAGGCGCTCCGGGAGTTGGTATTAAAATACCGAGAGAACAT TGTTCACGTGCGGACAGCAGCCGATCACATGGAGGAGAAGCTGAAGGCTGAAATACTTTT CCTGAAAGAGCAGATTCAAGCCGAACAATGTTTAAAAGAGAACCTCGAAGAAACTCTGCA GCTAGAAATAGAAAACTGCAAGGAAGAAATAGCTTCCATTTCCAGCTTAAAAGCTGAATT AGAAAGAATAAAAGTAGAAAAAGGACAGCTGGAGTCCACTTTAAGAGAGAAGTCTCAACA TCTTGAGAGCCTTCAGGAAATGAAAATCACTTTGGAAGAACAGTTAAAGAAAGAAACTGC TGCTAAGGTTACTGTTGAACAGCTAATGTTTGAAGAGAAGAACAAAGCTCAGAGGTTGCA GACAGAACTAGATGTCAGTGAACAAGTCCAGAGAGACTTTGTGAAGCTTTCCCAGACCCT TCAGGTGCAATTAGAGCGGATCCGGCAAGCAGACTCCTTGGAGAGAATCCGGGCCATTCT GAATGATACCAAACTGACAGACATTAACCAGCTCCCTGAGACATGACACCCTCATGGCAG GACTCTAGCCTGCACTTTGGGTTTTTAACTCATCTTTAGAGCAACATTAATTATTATTTA ACTCTTAACTGAAGAAGTCACACTCAAGGAAGACTGGAGAAATGCTTGATTCTAGTGGGC GAAGACTGCAGCACAGGAACAGCAAACAGCCGGGGTAATCTGCGGCAAAAAGACCTTCCA AATGGGAACACTGACCAGACTCCAGACTGGATTCCAGCAGGTGTGGGGTCAGATTTGGTG ATGGAGAAAGTGCTGTTTCCTTGCCTGCTTTATCCAACATTTCCCTACCCTAAAGCACCA TCCCAGTAGTGTTTGGAATGACATTTCATGTTCATAGCTGTTGGAAGAGAGATTTTTTTT CTGTTGTCTAGAGTTCATCAGTAACAGTATTCAGCTAGCAGGCGAGAGGTATAGTATGCC GTATGAATATTTTATATTAAAATATGAAGGTTGAGCGCAGGTCATTGGAGTGACTGTGCT TCCTAGCTCAGTGTGTTTTTTAAAAAACCATTTTATCTTGTGTTGGAGGACCTTAAATGC TATTGAAACCTGCCTGAGAACCGTAACAAGATGCTGGCAAAAAAAACAAAAAACAAAAAA CCCAGTTCCTTTGGATTGGAGCTTAATTATGAGAATTTGAAAACTTGGCTGGGGCTGTAT ATATTGGAAGTCGAGGTTAAAGGAAAGCACAAGAGACTGTTGGGAAGCACTTTTTCTGCT ACCTGGGTAAATTCTGGGTAAATTTCGTGGGCCCACAGGTACCAGGGTCAAGCGGAACTG GCACCGTCTACTTTTTTGAGAACTGTTTTAGTTTAGCTATCGGATCAGTGGAAAAAATAC TAATAAAAACAGCTGTCTGACGACATCTAGTATAAGTTTGTAAGTCTGCTGCTTGTTTTC AATTTGAATCAGTGGGCCTTAGTACTGTTTGTTTCAAGAAGTGTCAAATACAGACATGGT GATCACTTGGTTTGGCAGATACCGATTTTGTATTTTCCTTTCCTCATTTAGACCTGGAGT ATGATGATGCTTATGGTGAAGTTGGGGAAAACGCAGTTAGTTCATCAGTTTGGAAACCTG CTTTGTCATTTCTGTGCAGTTCGATTCCTCTCGGGCGTGGGGAAGGTGTCAGTGGACAGG TGGTCTTCGCGTAGCCTGGTGAAGTGTTGCAGAGGCACGGGGACGGAGTCACGTGCACTC TACCTGCAGTGCTGGCGGCCGTGGAAGGCTACACTGTTTAACTCATCATACAGATGGCTC AGAAGTAAAATTGTTGTTTTCAAATAGTTTTTGTGATTGGTGTTGTGTGACAGCAGAGGA TGTGAAGGAACCAGATGGGAATTAAGTGGACTGAGTAGATTCTGTGGCTTCACAGTGAAC TGTCTTTGTTATCAATGAAGTCGTAATGGACTAGCCCTAAAGAGCTTTAGTTCTGTCTTC CATAGGACAAGATAAGGACGACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTGGGAGACGTGGTGATATGTGTTCCAATTATGAAAAACAGTTGCAAGGAATTCATAT TCAGGAGGCTGAAACAAGAGACCAGGTGAAAAAATTACAGGTGATGCTAAGGCAAGCAAA TGACCAGTTAGAGAAGACAATGAAAGATAAACAGGAACTGGAAGACTTCATAAAGCAGAG CACTGAAGATGCAAGTCATCAGATCTCTGCACTTGTGCTAAGAGCCCAAGCATCTGAGAT CTTACTTGAAGAGTTACAACGGGGCTTCTCCCAGGCAAAGAGGGATGTTCAGGAACAGAT GGCAGTGCTGATGCAGTCCCGGGAGCAGGTTTCGGAAGAGCTGGTGAGGTTACAGAAAGA TAATGACAGTCTTCAGGGAAAGCACAGCTTGCATGTGTCATTACAGCAGGCGGAAGACTT CATTCTCCCGGACACCATAGAGGCGCTCCGGGAGTTGGTATTAAAATACCGAGAGAACAT TGTTCACGTGCGGACAGCAGCCGATCACATGGAGGAGAAGCTGAAGGCTGAAATACTTTT CCTGAAAGAGCAGATTCAAGCCGAACAATGTTTAAAAGAGAACCTCGAAGAAACTCTGCA GCTAGAAATAGAAAACTGCAAGGAAGAAATAGCTTCCATTTCCAGCTTAAAAGCTGAATT AGAAAGAATAAAAGTAGAAAAAGGACAGCTGGAGTCCACTTTAAGAGAGAAGTCTCAACA TCTTGAGAGCCTTCAGGAAATGAAAATCACTTTGGAAGAACAGTTAAAGAAAGAAACTGC TGCTAAGGTTACTGTTGAACAGCTAATGTTTGAAGAGAAGAACAAAGCTCAGAGGTTGCA GACAGAACTAGATGTCAGTGAACAAGTCCAGAGAGACTTTGTGAAGCTTTCCCAGACCCT TCAGGTGCAATTAGAGCGGATCCGGCAAGCAGACTCCTTGGAGAGAATCCGGGCCATTCT GAATGATACCAAACTGACAGACATTAACCAGCTCCCTGAGACATGACACCCTCATGGCAG GACTCTAGCCTGCACTTTGGGTTTTTAACTCATCTTTAGAGCAACATTAATTATTATTTA ACTCTTAACTGAAGAAGTCACACTCAAGGAAGACTGGAGAAATGCTTGATTCTAGTGGGC GAAGACTGCAGCACAGGAACAGCAAACAGCCGGGGTAATCTGCGGCAAAAAGACCTTCCA AATGGGAACACTGACCAGACTCCAGACTGGATTCCAGCAGGTGTGGGGTCAGATTTGGTG ATGGAGAAAGTGCTGTTTCCTTGCCTGCTTTATCCAACATTTCCCTACCCTAAAGCACCA TCCCAGTAGTGTTTGGAATGACATTTCATGTTCATAGCTGTTGGAAGAGAGATTTTTTTT CTGTTGTCTAGAGTTCATCAGTAACAGTATTCAGCTAGCAGGCGAGAGGTATAGTATGCC GTATGAATATTTTATATTAAAATATGAAGGTTGAGCGCAGGTCATTGGAGTGACTGTGCT TCCTAGCTCAGTGTGTTTTTTAAAAAACCATTTTATCTTGTGTTGGAGGACCTTAAATGC TATTGAAACCTGCCTGAGAACCGTAACAAGATGCTGGCAAAAAAAACAAAAAACAAAAAA CCCAGTTCCTTTGGATTGGAGCTTAATTATGAGAATTTGAAAACTTGGCTGGGGCTGTAT ATATTGGAAGTCGAGGTTAAAGGAAAGCACAAGAGACTGTTGGGAAGCACTTTTTCTGCT ACCTGGGTAAATTCTGGGTAAATTTCGTGGGCCCACAGGTACCAGGGTCAAGCGGAACTG GCACCGTCTACTTTTTTGAGAACTGTTTTAGTTTAGCTATCGGATCAGTGGAAAAAATAC TAATAAAAACAGCTGTCTGACGACATCTAGTATAAGTTTGTAAGTCTGCTGCTTGTTTTC AATTTGAATCAGTGGGCCTTAGTACTGTTTGTTTCAAGAAGTGTCAAATACAGACATGGT GATCACTTGGTTTGGCAGATACCGATTTTGTATTTTCCTTTCCTCATTTAGACCTGGAGT ATGATGATGCTTATGGTGAAGTTGGGGAAAACGCAGTTAGTTCATCAGTTTGGAAACCTG CTTTGTCATTTCTGTGCAGTTCGATTCCTCTCGGGCGTGGGGAAGGTGTCAGTGGACAGG TGGTCTTCGCGTAGCCTGGTGAAGTGTTGCAGAGGCACGGGGACGGAGTCACGTGCACTC TACCTGCAGTGCTGGCGGCCGTGGAAGGCTACACTGTTTAACTCATCATACAGATGGCTC AGAAGTAAAATTGTTGTTTTCAAATAGTTTTTGTGATTGGTGTTGTGTGACAGCAGAGGA TGTGAAGGAACCAGATGGGAATTAAGTGGACTGAGTAGATTCTGTGGCTTCACAGTGAAC TGTCTTTGTTATCAATGAAGTCGTAATGGACTAGCCCTAAAGAGCTTTAGTTCTGTCTTC CATAGGACAAGATAAGGACGACAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 84-632, - strand, RNAz p=0.754652 | |
| 517-632, - strand, RNAz p=0.791016 | |
| 982-1101, - strand, RNAz p=0.60389 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 84-632, - strand, RNAz p=0.754652 | |
| 517-632, - strand, RNAz p=0.791016 | |
| 982-1101, - strand, RNAz p=0.60389 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 84-202, gnl|bosTau2|chr19 (15127041-15127159) | |
| 84-202, gnl|canFam2|chr5 (34405407-34405308) | |
| 84-202, gnl|danRer3|chr5 (66158352-66158451) | |
| 84-202, gnl|echTel1|scaffold_323245 (38047-37947) | |
| 84-202, gnl|fr1|chrUn (181320941-181321037) | |
| 84-202, gnl|galGal2|chr19 (3201586-3201487) | |
| 84-202, gnl|hg17|chr17 (5209134-5209233) | |
| 84-202, gnl|Hg17|chr17 (5209139-5209257) | |
| 84-202, gnl|loxAfr1|scaffold_115635 (1237-1138) | |
| 84-202, gnl|mm7|chr11 (71002419-71002518) | |
| 84-202, gnl|Mm7|chr11 (71002424-71002542) | |
| 84-202, gnl|oryCun1|scaffold_186528 (11824-11725) | |
| 84-202, gnl|panTro1|chr19_random (46576246-46576147) | |
| 84-202, gnl|rheMac2|chr16 (5105514-5105613) | |
| 84-202, gnl|rn3|chr10 (57834230-57834329) | |
| 84-202, gnl|tetNig1|chrUn_random (29704446-29704539) | |
| 84-202, gnl|xenTro1|scaffold_227 (1556275-1556374) | |
| 441-632, gnl|bosTau2|chr19 (15139966-15140157) | |
| 441-632, gnl|canFam2|chr5 (34392749-34392538) | |
| 441-632, gnl|danRer3|chr5 (66165264-66165475) | |
| 441-632, gnl|dasNov1|scaffold_2126 (133381-133590) | |
| 441-632, gnl|echTel1|scaffold_324499 (583-794) | |
| 441-632, gnl|fr1|chrUn (181322956-181323165) | |
| 441-632, gnl|galGal2|chr19 (3198923-3198710) | |
| 441-632, gnl|hg17|chr17 (5221118-5221329) | |
| 441-632, gnl|Hg17|chr17 (5221133-5221324) | |
| 441-632, gnl|loxAfr1|scaffold_38388 (35147-34936) | |
| 441-632, gnl|mm7|chr11 (71015962-71016173) | |
| 441-632, gnl|Mm7|chr11 (71015977-71016168) | |
| 441-632, gnl|oryCun1|scaffold_203551 (46435-46224) | |
| 441-632, gnl|panTro1|chr19_random (46564130-46563919) | |
| 441-632, gnl|rheMac2|chr16 (5116246-5116457) | |
| 441-632, gnl|rn3|chr10 (57853867-57854078) | |
| 441-632, gnl|tetNig1|chrUn_random (29707915-29708119) | |
| 441-632, gnl|xenTro1|scaffold_227 (1557855-1558075) | |
| 685-789, gnl|bosTau2|chr19 (15143130-15143234) | |
| 685-789, gnl|canFam2|chr5 (34390343-34390239) | |
| 685-789, gnl|danRer3|chr5 (66173195-66173281) | |
| 685-789, gnl|dasNov1|scaffold_2126 (136653-136757) | |
| 685-789, gnl|echTel1|scaffold_323245 (23144-23040) | |
| 685-789, gnl|fr1|chrUn (181325552-181325656) | |
| 685-789, gnl|galGal2|chr19 (3197709-3197605) | |
| 685-789, gnl|hg17|chr17 (5224380-5224484) | |
| 685-789, gnl|Hg17|chr17 (5224379-5224483) | |
| 685-789, gnl|loxAfr1|scaffold_38388 (31388-31284) | |
| 685-789, gnl|mm7|chr11 (71019095-71019199) | |
| 685-789, gnl|Mm7|chr11 (71019094-71019198) | |
| 685-789, gnl|oryCun1|scaffold_203551 (43805-43701) | |
| 685-789, gnl|panTro1|chr19_random (46560712-46560608) | |
| 685-789, gnl|rheMac2|chr16 (5119502-5119606) | |
| 685-789, gnl|rn3|chr10 (57856857-57856961) | |
| 685-789, gnl|xenTro1|scaffold_227 (1560924-1561028) | |
| 903-2484, gnl|bosTau2|chr19 (15145637-15147198) | |
| 903-2484, gnl|Hg17|chr17 (5227139-5228701) | |
| 903-2484, gnl|Mm7|chr11 (71021954-71023435) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 84-202, gnl|bosTau2|chr19 (15127041-15127159) | |
| 84-202, gnl|canFam2|chr5 (34405407-34405308) | |
| 84-202, gnl|danRer3|chr5 (66158352-66158451) | |
| 84-202, gnl|echTel1|scaffold_323245 (38047-37947) | |
| 84-202, gnl|fr1|chrUn (181320941-181321037) | |
| 84-202, gnl|galGal2|chr19 (3201586-3201487) | |
| 84-202, gnl|hg17|chr17 (5209134-5209233) | |
| 84-202, gnl|Hg17|chr17 (5209139-5209257) | |
| 84-202, gnl|loxAfr1|scaffold_115635 (1237-1138) | |
| 84-202, gnl|mm7|chr11 (71002419-71002518) | |
| 84-202, gnl|Mm7|chr11 (71002424-71002542) | |
| 84-202, gnl|oryCun1|scaffold_186528 (11824-11725) | |
| 84-202, gnl|panTro1|chr19_random (46576246-46576147) | |
| 84-202, gnl|rheMac2|chr16 (5105514-5105613) | |
| 84-202, gnl|rn3|chr10 (57834230-57834329) | |
| 84-202, gnl|tetNig1|chrUn_random (29704446-29704539) | |
| 84-202, gnl|xenTro1|scaffold_227 (1556275-1556374) | |
| 441-632, gnl|bosTau2|chr19 (15139966-15140157) | |
| 441-632, gnl|canFam2|chr5 (34392749-34392538) | |
| 441-632, gnl|danRer3|chr5 (66165264-66165475) | |
| 441-632, gnl|dasNov1|scaffold_2126 (133381-133590) | |
| 441-632, gnl|echTel1|scaffold_324499 (583-794) | |
| 441-632, gnl|fr1|chrUn (181322956-181323165) | |
| 441-632, gnl|galGal2|chr19 (3198923-3198710) | |
| 441-632, gnl|hg17|chr17 (5221118-5221329) | |
| 441-632, gnl|Hg17|chr17 (5221133-5221324) | |
| 441-632, gnl|loxAfr1|scaffold_38388 (35147-34936) | |
| 441-632, gnl|mm7|chr11 (71015962-71016173) | |
| 441-632, gnl|Mm7|chr11 (71015977-71016168) | |
| 441-632, gnl|oryCun1|scaffold_203551 (46435-46224) | |
| 441-632, gnl|panTro1|chr19_random (46564130-46563919) | |
| 441-632, gnl|rheMac2|chr16 (5116246-5116457) | |
| 441-632, gnl|rn3|chr10 (57853867-57854078) | |
| 441-632, gnl|tetNig1|chrUn_random (29707915-29708119) | |
| 441-632, gnl|xenTro1|scaffold_227 (1557855-1558075) | |
| 685-789, gnl|bosTau2|chr19 (15143130-15143234) | |
| 685-789, gnl|canFam2|chr5 (34390343-34390239) | |
| 685-789, gnl|danRer3|chr5 (66173195-66173281) | |
| 685-789, gnl|dasNov1|scaffold_2126 (136653-136757) | |
| 685-789, gnl|echTel1|scaffold_323245 (23144-23040) | |
| 685-789, gnl|fr1|chrUn (181325552-181325656) | |
| 685-789, gnl|galGal2|chr19 (3197709-3197605) | |
| 685-789, gnl|hg17|chr17 (5224380-5224484) | |
| 685-789, gnl|Hg17|chr17 (5224379-5224483) | |
| 685-789, gnl|loxAfr1|scaffold_38388 (31388-31284) | |
| 685-789, gnl|mm7|chr11 (71019095-71019199) | |
| 685-789, gnl|Mm7|chr11 (71019094-71019198) | |
| 685-789, gnl|oryCun1|scaffold_203551 (43805-43701) | |
| 685-789, gnl|panTro1|chr19_random (46560712-46560608) | |
| 685-789, gnl|rheMac2|chr16 (5119502-5119606) | |
| 685-789, gnl|rn3|chr10 (57856857-57856961) | |
| 685-789, gnl|xenTro1|scaffold_227 (1560924-1561028) | |
| 903-2484, gnl|bosTau2|chr19 (15145637-15147198) | |
| 903-2484, gnl|Hg17|chr17 (5227139-5228701) | |
| 903-2484, gnl|Mm7|chr11 (71021954-71023435) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| sme (0.610874) | |
| ste (0.405625) | |
| cut (0.339847) | |
| ski (0.29347) | |
| csk (0.281492) | |
| thg (0.253582) | |
| nms (0.213858) | |
| mas (0.210305) | |
| cty (0.20816) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| cje (0.165235) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| ute (0.132784) | |
| kid (0.129735) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.610874) | |
| ste (0.405625) | |
| cut (0.339847) | |
| ski (0.29347) | |
| csk (0.281492) | |
| thg (0.253582) | |
| nms (0.213858) | |
| mas (0.210305) | |
| cty (0.20816) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| cje (0.165235) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| ute (0.132784) | |
| kid (0.129735) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| eje (0.0988338) |