Non-Coding RNA Search

Ss1.1-rcje13_d6.5

Sequence:


               
               CGGTGGGCTGGGGGTGTTTGTCCAGCTGATGCCCATCCTCATCCTGATCCTCGTGTCAGC
TCTCAGCCAGCTTATGGTCTCCAGTCCACCCTATAGTCTGAGCCTGAGGCCGTCGGTGGG
CCACGTCCACAAGCGGGTCACTGACCACCTGAACGTCGTCTACTACGTAGCAGACACATT
CTCTGAAGAGTACACAGGCTCCAGCCTCAAAATGGTTGAACGGAATGTGGAAGACGACTA
TATTGCCAATCTCCGAAACAACTGTTGGAAGGAAAAGCAGCAAAAGGAAGGCTTGCTGTA
TCGGGCCCGCTACTTTGGCGACACAGATATGTACCACAAAGCACAGAAGATGGGCACCCC
AAGCTGTAACCGACTGTCAGAGGTGCAGGCCTCCCTGCATGGATAGTCCTGGGCCAGCCG
TGCCCCCGAGGTCCAAACTATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGGGCTGGGGGTGTTTGTCCAGCTGATGCCCATCCTCATCCTGATCCTCGTGTCAGC
TCTCAGCCAGCTTATGGTCTCCAGTCCACCCTATAGTCTGAGCCTGAGGCCGTCGGTGGG
CCACGTCCACAAGCGGGTCACTGACCACCTGAACGTCGTCTACTACGTAGCAGACACATT
CTCTGAAGAGTACACAGGCTCCAGCCTCAAAATGGTTGAACGGAATGTGGAAGACGACTA
TATTGCCAATCTCCGAAACAACTGTTGGAAGGAAAAGCAGCAAAAGGAAGGCTTGCTGTA
TCGGGCCCGCTACTTTGGCGACACAGATATGTACCACAAAGCACAGAAGATGGGCACCCC
AAGCTGTAACCGACTGTCAGAGGTGCAGGCCTCCCTGCATGGATAGTCCTGGGCCAGCCG
TGCCCCCGAGGTCCAAACTATGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545524|emb|CAH56413.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545524|emb|CAH56413.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               112-284, gnl|bosTau2|chr28 (21985716-21985544)
               

               
               112-284, gnl|Hg17|chr10 (73766460-73766288)
               

               
               112-284, gnl|Mm7|chr10 (59413783-59413955)
               


               
               285-443, gnl|bosTau2|chr28 (21984997-21984840)
               

               
               285-443, gnl|Hg17|chr10 (73765695-73765538)
               

               
               285-443, gnl|Mm7|chr10 (59414545-59414702)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-284, gnl|bosTau2|chr28 (21985716-21985544)
               

               
               112-284, gnl|Hg17|chr10 (73766460-73766288)
               

               
               112-284, gnl|Mm7|chr10 (59413783-59413955)
               


               
               285-443, gnl|bosTau2|chr28 (21984997-21984840)
               

               
               285-443, gnl|Hg17|chr10 (73765695-73765538)
               

               
               285-443, gnl|Mm7|chr10 (59414545-59414702)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cki (0.330469)
               

               
               cje (0.165235)
               

               
               sug (0.127291)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               cje (0.165235)
               

               
               sug (0.127291)

	112-284, gnl\|bosTau2\|chr28 (21985716-21985544)
	112-284, gnl\|Hg17\|chr10 (73766460-73766288)
	112-284, gnl\|Mm7\|chr10 (59413783-59413955)

	285-443, gnl\|bosTau2\|chr28 (21984997-21984840)
	285-443, gnl\|Hg17\|chr10 (73765695-73765538)
	285-443, gnl\|Mm7\|chr10 (59414545-59414702)