Non-Coding RNA Search

Ss1.1-rcje17_b11.5

Sequence:


               
               TTTGCTGTTAATCACTGTCACAGCCACCAATACCTCAGCGGGTGATGTCACCCACTTCAT
CTGCCAGGCCGCTGTGCCCAAGGTTTGTAGAAGACTAGGATTCAGATGTTGCCTGGGCAC
TCCAGGAGAAAAGGCCACTAAGTAGAGGAGGTGGGTCAGGAAGAGAGTGAGATGAGGAGG
GAGTGATATGCCAGGACAGGCACTTGGGGATTTAGGGGAAGAGGGTTCAAACTACTGGGT
GTGGAGGGGTTGCCTGAGCCCAGCCAGTTGCCTTACTGTGGGATCTGTCCAACCTTCTGT
GTTCAGAGTTTCCAACTACAGCTACAGGCCCCTAGTGGGGACACAGTTCCAGCTCAGGGT
GGCCTTCCGATGACGCAGCTCCTCAGAATCCTCAACCCTAACAAGGTGAGCTCCAGGAGC
CCCTCAAGGCTAGGACCCAGGAAAGGGGGCTGTCATAGGTGCTAACCCTGGTCTCTGCTC
TCTTATCTCTAGGCCCCCTTGCGGCTGAAGCTGCGCCTCACCTACAACCACTTTGGCCAG
TCGGTGCAGGAAATCTTTGAGGTGAACAACTTGCCTGTGGAGACATGGCAGTAACTCTGC
CTCCACTCACAGTATGAAGTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCTGTTAATCACTGTCACAGCCACCAATACCTCAGCGGGTGATGTCACCCACTTCAT
CTGCCAGGCCGCTGTGCCCAAGGTTTGTAGAAGACTAGGATTCAGATGTTGCCTGGGCAC
TCCAGGAGAAAAGGCCACTAAGTAGAGGAGGTGGGTCAGGAAGAGAGTGAGATGAGGAGG
GAGTGATATGCCAGGACAGGCACTTGGGGATTTAGGGGAAGAGGGTTCAAACTACTGGGT
GTGGAGGGGTTGCCTGAGCCCAGCCAGTTGCCTTACTGTGGGATCTGTCCAACCTTCTGT
GTTCAGAGTTTCCAACTACAGCTACAGGCCCCTAGTGGGGACACAGTTCCAGCTCAGGGT
GGCCTTCCGATGACGCAGCTCCTCAGAATCCTCAACCCTAACAAGGTGAGCTCCAGGAGC
CCCTCAAGGCTAGGACCCAGGAAAGGGGGCTGTCATAGGTGCTAACCCTGGTCTCTGCTC
TCTTATCTCTAGGCCCCCTTGCGGCTGAAGCTGCGCCTCACCTACAACCACTTTGGCCAG
TCGGTGCAGGAAATCTTTGAGGTGAACAACTTGCCTGTGGAGACATGGCAGTAACTCTGC
CTCCACTCACAGTATGAAGTCTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               242-360, - strand, RNAz p=0.866233

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-360, - strand, RNAz p=0.866233

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr10 (13620119-13620745)
               

               
               1-624, gnl|Hg17|chr14 (23099385-23098770)
               

               
               1-624, gnl|Mm7|chr14 (49966231-49964765)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr10 (13620119-13620745)
               

               
               1-624, gnl|Hg17|chr14 (23099385-23098770)
               

               
               1-624, gnl|Mm7|chr14 (49966231-49964765)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cje (0.165235)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

	1-624, gnl\|bosTau2\|chr10 (13620119-13620745)
	1-624, gnl\|Hg17\|chr14 (23099385-23098770)
	1-624, gnl\|Mm7\|chr14 (49966231-49964765)