Non-Coding RNA Search

Ss1.1-rcje17_p6.5

Sequence:


               
               ATTTAACACAGTTATGTTCACGGAACAGGTGTGCACCTCGGCATTTACGGAGCTGAGTCC
TGGCGGGTACACCGCCATATGCATTACCCAAAGGACATCCAGAGTTTTCCAGCAAAGACC
CAGCCTAGAGGAGTCAAGTCCATTCCCTCTCAGAACTGGGAGGCACTGGTGTGGCCTCTC
TTGATGACATCCAGTGGCCAAGCCAGCCCTCTCAGGAAGCCAGCCTTGGCCCGTGCCAGA
GCTGTCAGGTGCAGACAGATGGGAAGCGGACGTGTTCTCATTTGTCGCTCCGGACTAGAG
GGAGGCTGAGTCTGTTTAGTTTCATGTCAGACCCTTTCCAAGTGCTTTCTTGGTTCGGAA
TCAAAAGAGTGTCAGGGGTCTGGTGAACGACTTTGTTCGCTTTACGTTTACAAGAGGCGC
GGGGGTTGTGACATTGACAAGCTGGGGTAAACCTCCCTGAACTCCCTTTTGGAGGGCCAG
CTCCTCAGCCGGCACCCAAAGCATCGTAACCCTGAATCGTCCAAGCTTGGGGCTTGCGCA
TTACATCTCCTGGAGCCAAACAAGCCAGTCCAATTGGTTTCCCTGTTTTCCAACTAAACG
TTTGAGAAAAAGCCGCATCACTCGAAACTGATCACACGCATCAGTTTCTCTCAGCTTTCA
AGAGTGCATTGAGTTATAGCCAACATCACAGTCTTGACTCAGTTTAAAAACCAACTTTTT
TGGTGATTGGAGAGCTAGTGGTGTTCCCTAAGCCGGCTCCTCTGAAAATGAGCTGGGGCG
TTGGGTGCTGGAAGAAAGGTTTAACAGCCTGCCCTTACACAGTTGGCTAACTAAAATAAA
CTCTGCCTGCCTGGTTCAGGCTCTGGGTACAAATGTTGCTGTTCCTATTAGCAGGTGTTT
TCAGCACTCTGACTGGCCTGAGCAGATGGGGGCTGTCGCAGGGACAAGCTAAGCATCCTG
ACACACGCCTTGTCAAAAACCTCACTTACCCCTGTCGCCTCTACAGCCCCCCAAGGGGAG
AAAAGGTTGAGAGGGTCCTTGCTCGTTCTCTAGCAAACAAGTCCTCTCCCATGCGGTGGC
GCTGGAAGGCTTAGGTTTTGAAAATCTTGACTGTTAAAAACAGAGTTTGAATACATCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAACACAGTTATGTTCACGGAACAGGTGTGCACCTCGGCATTTACGGAGCTGAGTCC
TGGCGGGTACACCGCCATATGCATTACCCAAAGGACATCCAGAGTTTTCCAGCAAAGACC
CAGCCTAGAGGAGTCAAGTCCATTCCCTCTCAGAACTGGGAGGCACTGGTGTGGCCTCTC
TTGATGACATCCAGTGGCCAAGCCAGCCCTCTCAGGAAGCCAGCCTTGGCCCGTGCCAGA
GCTGTCAGGTGCAGACAGATGGGAAGCGGACGTGTTCTCATTTGTCGCTCCGGACTAGAG
GGAGGCTGAGTCTGTTTAGTTTCATGTCAGACCCTTTCCAAGTGCTTTCTTGGTTCGGAA
TCAAAAGAGTGTCAGGGGTCTGGTGAACGACTTTGTTCGCTTTACGTTTACAAGAGGCGC
GGGGGTTGTGACATTGACAAGCTGGGGTAAACCTCCCTGAACTCCCTTTTGGAGGGCCAG
CTCCTCAGCCGGCACCCAAAGCATCGTAACCCTGAATCGTCCAAGCTTGGGGCTTGCGCA
TTACATCTCCTGGAGCCAAACAAGCCAGTCCAATTGGTTTCCCTGTTTTCCAACTAAACG
TTTGAGAAAAAGCCGCATCACTCGAAACTGATCACACGCATCAGTTTCTCTCAGCTTTCA
AGAGTGCATTGAGTTATAGCCAACATCACAGTCTTGACTCAGTTTAAAAACCAACTTTTT
TGGTGATTGGAGAGCTAGTGGTGTTCCCTAAGCCGGCTCCTCTGAAAATGAGCTGGGGCG
TTGGGTGCTGGAAGAAAGGTTTAACAGCCTGCCCTTACACAGTTGGCTAACTAAAATAAA
CTCTGCCTGCCTGGTTCAGGCTCTGGGTACAAATGTTGCTGTTCCTATTAGCAGGTGTTT
TCAGCACTCTGACTGGCCTGAGCAGATGGGGGCTGTCGCAGGGACAAGCTAAGCATCCTG
ACACACGCCTTGTCAAAAACCTCACTTACCCCTGTCGCCTCTACAGCCCCCCAAGGGGAG
AAAAGGTTGAGAGGGTCCTTGCTCGTTCTCTAGCAAACAAGTCCTCTCCCATGCGGTGGC
GCTGGAAGGCTTAGGTTTTGAAAATCTTGACTGTTAAAAACAGAGTTTGAATACATCACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               990-1105, + strand, RNAz p=0.909088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               990-1105, + strand, RNAz p=0.909088

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               16-1140, gnl|bosTau2|chr13 (58708971-58710081)
               

               
               16-1140, gnl|Hg17|chr20 (49438123-49437021)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-1140, gnl|bosTau2|chr13 (58708971-58710081)
               

               
               16-1140, gnl|Hg17|chr20 (49438123-49437021)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cje (0.330469)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

	16-1140, gnl\|bosTau2\|chr13 (58708971-58710081)
	16-1140, gnl\|Hg17\|chr20 (49438123-49437021)

	cje (0.330469)
	col (0.195008)
	fty (0.17584)
	csp (0.161186)
	cag (0.151194)
	ese (0.126502)
	clu (0.119646)