Non-Coding RNA Search

Ss1.1-rcje19_f20.5

Sequence:


               
               AAATTGCCTGCACCGTCCCCTCGGAATGTGAGAAATATTGCGGCACCAAGGTTGGCTGTT
CCAACATTGCCTACCCGACCTTGGTGGTGGAACTCATGCCCAATGGATTGCGAGGCCTGA
TGCTGTCGGTCATGTTGGCCTCTCTCATGAGCTCCCTGACCTCCATCTTCAACAGCGCCA
GCACTCTCTTCACCATGGATGTCTACACCAAGATCCGGAAGAGAGCATCCGAGAAAGAGC
TCATGATTGCGGGAAGGCTGTTCATCCTGGTGCTGATTGGCATCAGCATTGCCTGGGTGC
CCATTGTGCAGTCAGCACAAAGTGGGCAGCTCTTCGATTACATCCAGTCTGTCACCAGTT
ACTTGGGACCACCCATCGCAGCTGTCTTCCTACTTGCTATTTTCTGCAAGAGAGTCAATG
AGGAGGGAGCCTTTTGGGGACTGGTCATAGGATGTATGATTGGGCTGGCCCGTATGATTA
CCGAGTTTGCCTATGGAACCGGGAGCTGCGTGGAGCCCAGCAACTGTCCCACAATTATCT
GTGGTGTGCACTACTTGTACTTTGCCATCATCCTCTTTGTCATTTCCATCATCATCGTCC
TGGTCGTCTCCCTCTTCACCAAGCCCATTCCAGATGTGCATCTCTACCGCCTGTGTTGGA
GCCTGCGCAACAGCAAAGAGGAGCGTATTGACCTGGATGCAGAGGAGGAGGACATTCAAG
AAGCCCCAGAAGAGACCATTGAAATAGAAGTTCCTGAGGAGAAGAAAGGATGCTTCAGGA
GGACCTATGACCTGTTTTGTGGCCTGGACCAGCAGAAGGGCCCCAAAATGACCAAGGAAG
AGGAGGCAGCCATGAAGCTGAAGATGACAGACACCTCAGAGAAGCCTTTGTGGCGGACAG
TAGTGAACATCAATGGCATTATCCTGCTGACCGTGGCCGTATTCTGCCATGCATATTTTG
CCTGAAATCCTGCCTTCTGCCACAGGCTGTGCCCTGAAGGCTGGACTCTTTACTCTGTTT
CCTTTTAGTCCCATTCTGTGCTGTCAAAGGGACACCAGCCAGTTGTAAATTTTGCCTAGT
CAATAAATGTGTACATTTGTAATTAGCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTGCCTGCACCGTCCCCTCGGAATGTGAGAAATATTGCGGCACCAAGGTTGGCTGTT
CCAACATTGCCTACCCGACCTTGGTGGTGGAACTCATGCCCAATGGATTGCGAGGCCTGA
TGCTGTCGGTCATGTTGGCCTCTCTCATGAGCTCCCTGACCTCCATCTTCAACAGCGCCA
GCACTCTCTTCACCATGGATGTCTACACCAAGATCCGGAAGAGAGCATCCGAGAAAGAGC
TCATGATTGCGGGAAGGCTGTTCATCCTGGTGCTGATTGGCATCAGCATTGCCTGGGTGC
CCATTGTGCAGTCAGCACAAAGTGGGCAGCTCTTCGATTACATCCAGTCTGTCACCAGTT
ACTTGGGACCACCCATCGCAGCTGTCTTCCTACTTGCTATTTTCTGCAAGAGAGTCAATG
AGGAGGGAGCCTTTTGGGGACTGGTCATAGGATGTATGATTGGGCTGGCCCGTATGATTA
CCGAGTTTGCCTATGGAACCGGGAGCTGCGTGGAGCCCAGCAACTGTCCCACAATTATCT
GTGGTGTGCACTACTTGTACTTTGCCATCATCCTCTTTGTCATTTCCATCATCATCGTCC
TGGTCGTCTCCCTCTTCACCAAGCCCATTCCAGATGTGCATCTCTACCGCCTGTGTTGGA
GCCTGCGCAACAGCAAAGAGGAGCGTATTGACCTGGATGCAGAGGAGGAGGACATTCAAG
AAGCCCCAGAAGAGACCATTGAAATAGAAGTTCCTGAGGAGAAGAAAGGATGCTTCAGGA
GGACCTATGACCTGTTTTGTGGCCTGGACCAGCAGAAGGGCCCCAAAATGACCAAGGAAG
AGGAGGCAGCCATGAAGCTGAAGATGACAGACACCTCAGAGAAGCCTTTGTGGCGGACAG
TAGTGAACATCAATGGCATTATCCTGCTGACCGTGGCCGTATTCTGCCATGCATATTTTG
CCTGAAATCCTGCCTTCTGCCACAGGCTGTGCCCTGAAGGCTGGACTCTTTACTCTGTTT
CCTTTTAGTCCCATTCTGTGCTGTCAAAGGGACACCAGCCAGTTGTAAATTTTGCCTAGT
CAATAAATGTGTACATTTGTAATTAGCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9TTR6_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9TTR6_BOVIN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-433, gnl|bosTau2|chr16 (19197745-19198175)
               

               
               3-433, gnl|Hg17|chr21 (34390349-34390779)
               

               
               3-433, gnl|Mm7|chr16 (92128384-92128814)
               


               
               741-1105, gnl|bosTau2|chr17 (43521228-43521591)
               

               
               741-1105, gnl|Hg17|chr22 (30830530-30830888)
               

               
               741-1105, gnl|Mm7|chr5 (32223524-32223881)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-433, gnl|bosTau2|chr16 (19197745-19198175)
               

               
               3-433, gnl|Hg17|chr21 (34390349-34390779)
               

               
               3-433, gnl|Mm7|chr16 (92128384-92128814)
               


               
               741-1105, gnl|bosTau2|chr17 (43521228-43521591)
               

               
               741-1105, gnl|Hg17|chr22 (30830530-30830888)
               

               
               741-1105, gnl|Mm7|chr5 (32223524-32223881)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               jej (0.692452)
               

               
               cje (0.660939)
               

               
               ill (0.526778)
               

               
               sin (0.349895)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.692452)
               

               
               cje (0.660939)
               

               
               ill (0.526778)
               

               
               sin (0.349895)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)
               

               
               eje (0.0988338)

	3-433, gnl\|bosTau2\|chr16 (19197745-19198175)
	3-433, gnl\|Hg17\|chr21 (34390349-34390779)
	3-433, gnl\|Mm7\|chr16 (92128384-92128814)

	741-1105, gnl\|bosTau2\|chr17 (43521228-43521591)
	741-1105, gnl\|Hg17\|chr22 (30830530-30830888)
	741-1105, gnl\|Mm7\|chr5 (32223524-32223881)

	jej (0.692452)
	cje (0.660939)
	ill (0.526778)
	sin (0.349895)
	duo (0.172801)
	tbr (0.154178)
	csk (0.140746)
	eje (0.0988338)