Non-Coding RNA Search

Ss1.1-rcje20_g12.5

Sequence:


               
               ACACACACACACACGCACACACACAGAGATGGCCACTGTGAACGGAGGCACCATCACTCT
CGGTCTGGAAATCAGTCTGGTTCTATTGTGTGTCGGAGCAAAGGACCAAGTCAGACAAAG
AAGATCACGTGGAAACGTACAAGCAGGCAGAGTCATACCAAGAACCTACAAAAATCCCAA
TGGGTCTCAACCAGTACTATCTCCCATACAGCCTCCCTTGCCCCAGAAAGGATTGAGGGC
AGGTCCTCCCATTTATAAACCCCTGAGCTTCACAGGCCTGGGATTAGGAGGCCCCCAGGC
AGGGACCCCACCTGTGACACAGAAGCAGCATGATGTGCTGGAAGGAATGCTGGATGGGGG
ACCTGGCCCTCTCCACACCTTGGCTGAAACGTTCACGATTCTAAAACAGGCGTAGGATAC
TGTGGGAACAGGAGCCGTGGTGGCGGCAGAAATTGCTACCTTTTATTAAATACTTACCAA
GACGTAGGTGCCGCCGGTGGCTGTACCGTCTTGGTCTTTCAACCACCTTTCCTGGAAGTG
GACCACACGCAAAAGGCCGTTACCATCCAGTGCTCCTTCTCCACGGTGGGGTGCCCTGCG
GAGCAGCCCAGGAGCCTGTGGTTTCGCTATGGCACTCACCAGCCCGAGAACCTGTGCTTG
GATGGATGCAGAAGTGAGACAGACAAATTCACGGTTGGGACTTCGGCCCAAAACCAAGTT
TCCCTCACCGTGAACAGGGTGGCCCTCAATGACAGTGCCATCTACATCTGTGGAATAGCC
TTTCCCAGTTCGAAGGAGCCAAAAGCTAAGCAAACCGGAGGAGGGACGGTGCTGGTGGTA
AGAGGTCAGTCAAGGCTTTGGTCCCTTGTGCTGTGTCCTGCTCAGGCCTTTAAACGCATT
GCATTACTTAAATGCAGAGAGGATGAGATACGTTTGCTAACTGCCGAGCCAGTGAAGAGG
GTCAGCTGCACACAAGCCAACATGCAGTTTGAATTAAAGAACTCCTTTGACCCCCCTGGG
AGATGCAAGCACCACAGACACAGAGTCGGGGTTATGTCAGGTGCTATATTCTTCCCATGC
TGACCCTTTGGTAGTCTGGGGGGACCACCTTCTGTATGTTACATGGACTGAAATGCGATG
GTTAACTGTCCGCCTAGTCAGGCACGGGTCTGCTCCTGTACCATCTAGAACAAAACACTA
GAGAAGTGTAAGTGATCAATAAACTGGACTCAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACACACACACACGCACACACACAGAGATGGCCACTGTGAACGGAGGCACCATCACTCT
CGGTCTGGAAATCAGTCTGGTTCTATTGTGTGTCGGAGCAAAGGACCAAGTCAGACAAAG
AAGATCACGTGGAAACGTACAAGCAGGCAGAGTCATACCAAGAACCTACAAAAATCCCAA
TGGGTCTCAACCAGTACTATCTCCCATACAGCCTCCCTTGCCCCAGAAAGGATTGAGGGC
AGGTCCTCCCATTTATAAACCCCTGAGCTTCACAGGCCTGGGATTAGGAGGCCCCCAGGC
AGGGACCCCACCTGTGACACAGAAGCAGCATGATGTGCTGGAAGGAATGCTGGATGGGGG
ACCTGGCCCTCTCCACACCTTGGCTGAAACGTTCACGATTCTAAAACAGGCGTAGGATAC
TGTGGGAACAGGAGCCGTGGTGGCGGCAGAAATTGCTACCTTTTATTAAATACTTACCAA
GACGTAGGTGCCGCCGGTGGCTGTACCGTCTTGGTCTTTCAACCACCTTTCCTGGAAGTG
GACCACACGCAAAAGGCCGTTACCATCCAGTGCTCCTTCTCCACGGTGGGGTGCCCTGCG
GAGCAGCCCAGGAGCCTGTGGTTTCGCTATGGCACTCACCAGCCCGAGAACCTGTGCTTG
GATGGATGCAGAAGTGAGACAGACAAATTCACGGTTGGGACTTCGGCCCAAAACCAAGTT
TCCCTCACCGTGAACAGGGTGGCCCTCAATGACAGTGCCATCTACATCTGTGGAATAGCC
TTTCCCAGTTCGAAGGAGCCAAAAGCTAAGCAAACCGGAGGAGGGACGGTGCTGGTGGTA
AGAGGTCAGTCAAGGCTTTGGTCCCTTGTGCTGTGTCCTGCTCAGGCCTTTAAACGCATT
GCATTACTTAAATGCAGAGAGGATGAGATACGTTTGCTAACTGCCGAGCCAGTGAAGAGG
GTCAGCTGCACACAAGCCAACATGCAGTTTGAATTAAAGAACTCCTTTGACCCCCCTGGG
AGATGCAAGCACCACAGACACAGAGTCGGGGTTATGTCAGGTGCTATATTCTTCCCATGC
TGACCCTTTGGTAGTCTGGGGGGACCACCTTCTGTATGTTACATGGACTGAAATGCGATG
GTTAACTGTCCGCCTAGTCAGGCACGGGTCTGCTCCTGTACCATCTAGAACAAAACACTA
GAGAAGTGTAAGTGATCAATAAACTGGACTCAGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61814536|ref|XP_589588.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61814536|ref|XP_589588.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               204-801, - strand, RNAz p=0.986019

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-801, - strand, RNAz p=0.986019

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               86-359, gnl|bosTau2|chr25 (18587672-18587961)
               

               
               86-359, gnl|Hg17|chr16 (21567649-21567365)
               


               
               486-1072, gnl|bosTau2|chr25 (18589526-18590109)
               

               
               486-1072, gnl|Hg17|chr16 (21566316-21565661)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-359, gnl|bosTau2|chr25 (18587672-18587961)
               

               
               86-359, gnl|Hg17|chr16 (21567649-21567365)
               


               
               486-1072, gnl|bosTau2|chr25 (18589526-18590109)
               

               
               486-1072, gnl|Hg17|chr16 (21566316-21565661)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               cbl (0.114797)

	86-359, gnl\|bosTau2\|chr25 (18587672-18587961)
	86-359, gnl\|Hg17\|chr16 (21567649-21567365)

	486-1072, gnl\|bosTau2\|chr25 (18589526-18590109)
	486-1072, gnl\|Hg17\|chr16 (21566316-21565661)