Non-Coding RNA Search

Ss1.1-rcje31_b6.5

Sequence:


               
               CGGTCAACACGAGTGTCATTTGACCCGGTGTCCCACCAACTCTGCAGCTCCGTCCAGCCC
TGCCCTTAGGGAACGGGAGAAGAGGGTGGGAGAGGCTTTTCTGGGGCTCCATCAAAGGGC
TTGTATTTTTTTTTTTTTCTCAGAGCGATGCTTTCAGGTCCTGGGGTGTGTCCTTCTCTG
GCAAAAGATGGAGCGCCTTAGATGTGTCCTCAAGACCTGCCGCAGGATTCCGGTGTCCGC
CCTCTTAGCCGCCGTTGGCCTGGTGGTCTCTGGGATAGTCCAGGCCGCTGGAGAAGTGGA
CGAGAAGGGTTTGAGCATGAGCATGGCAGAAGGGGACACCTTGATATCAGTGGATTATGA
AGTTTTTGGAAAGGTGCAAGGAGTGTTTTTCCGCAAGTACACTCAGGCTGAGGGTAAAAA
GCTTGGATTAGTAGGCTGGGTCCAGAACACTGACCAGGGCACAGTGCAGGGACAACTGCA
AGGTCCCACTTCCAAAGTACGTCATATGCAGGAATGGCTTGAGACAAGGGGAAGTCCCAA
ATCGCACATCGACAGAGCAAGCTTCAACAACGAGAAAGTCATCTCAAAGTTGGATTACTC
AGATTTTCAAATTGTGAAATAATGATCTGAATTTAAATTTTCCAAGATACTCAGTGGTTT
TGTTTTCTTATTGTTAATAGAGATAGAATGCTTCTGTTTCAGTATTAGAATTTGTCAGTA
AGTTATTTTAGTGTCAGATATTTGATAGTTACTGTATATTATGTGTATGATGGAAGGATT
ACAACTGTACACAATTCTAATCAATAAACACACAGGACATTCTGTGTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTCAACACGAGTGTCATTTGACCCGGTGTCCCACCAACTCTGCAGCTCCGTCCAGCCC
TGCCCTTAGGGAACGGGAGAAGAGGGTGGGAGAGGCTTTTCTGGGGCTCCATCAAAGGGC
TTGTATTTTTTTTTTTTTCTCAGAGCGATGCTTTCAGGTCCTGGGGTGTGTCCTTCTCTG
GCAAAAGATGGAGCGCCTTAGATGTGTCCTCAAGACCTGCCGCAGGATTCCGGTGTCCGC
CCTCTTAGCCGCCGTTGGCCTGGTGGTCTCTGGGATAGTCCAGGCCGCTGGAGAAGTGGA
CGAGAAGGGTTTGAGCATGAGCATGGCAGAAGGGGACACCTTGATATCAGTGGATTATGA
AGTTTTTGGAAAGGTGCAAGGAGTGTTTTTCCGCAAGTACACTCAGGCTGAGGGTAAAAA
GCTTGGATTAGTAGGCTGGGTCCAGAACACTGACCAGGGCACAGTGCAGGGACAACTGCA
AGGTCCCACTTCCAAAGTACGTCATATGCAGGAATGGCTTGAGACAAGGGGAAGTCCCAA
ATCGCACATCGACAGAGCAAGCTTCAACAACGAGAAAGTCATCTCAAAGTTGGATTACTC
AGATTTTCAAATTGTGAAATAATGATCTGAATTTAAATTTTCCAAGATACTCAGTGGTTT
TGTTTTCTTATTGTTAATAGAGATAGAATGCTTCTGTTTCAGTATTAGAATTTGTCAGTA
AGTTATTTTAGTGTCAGATATTTGATAGTTACTGTATATTATGTGTATGATGGAAGGATT
ACAACTGTACACAATTCTAATCAATAAACACACAGGACATTCTGTGTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|113329|sp|P24540|ACYP1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|113329|sp|P24540|ACYP1_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               88-204, + strand, RNAz p=0.915013

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-204, + strand, RNAz p=0.915013

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               12-268, gnl|bosTau2|chr10 (56680002-56679749)
               

               
               12-268, gnl|Hg17|chr14 (74605961-74605706)
               

               
               12-268, gnl|Mm7|chr12 (83288297-83288056)
               


               
               402-834, gnl|bosTau2|chr10 (56669279-56668849)
               

               
               402-834, gnl|Hg17|chr14 (74590120-74589687)
               

               
               402-834, gnl|Mm7|chr12 (83272670-83272231)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-268, gnl|bosTau2|chr10 (56680002-56679749)
               

               
               12-268, gnl|Hg17|chr14 (74605961-74605706)
               

               
               12-268, gnl|Mm7|chr12 (83288297-83288056)
               


               
               402-834, gnl|bosTau2|chr10 (56669279-56668849)
               

               
               402-834, gnl|Hg17|chr14 (74590120-74589687)
               

               
               402-834, gnl|Mm7|chr12 (83272670-83272231)

Expressed library(ies): 29 entry(ies)

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Expressed library(ies): 29 entry(ies)

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               cbe (1.67464)
               

               
               thg (0.633955)
               

               
               fco (0.471624)
               

               
               tes (0.415628)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               sto (0.359648)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               cly (0.120642)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.67464)
               

               
               thg (0.633955)
               

               
               fco (0.471624)
               

               
               tes (0.415628)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               sto (0.359648)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               cly (0.120642)

	12-268, gnl\|bosTau2\|chr10 (56680002-56679749)
	12-268, gnl\|Hg17\|chr14 (74605961-74605706)
	12-268, gnl\|Mm7\|chr12 (83288297-83288056)

	402-834, gnl\|bosTau2\|chr10 (56669279-56668849)
	402-834, gnl\|Hg17\|chr14 (74590120-74589687)
	402-834, gnl\|Mm7\|chr12 (83272670-83272231)

	cbe (1.67464)
	thg (0.633955)
	fco (0.471624)
	tes (0.415628)
	fcc (0.39557)
	aor (0.390549)
	sto (0.359648)
	fhi (0.339155)
	sme (0.305437)
	cte (0.29274)
	fce (0.271592)
	ste (0.270416)
	ova (0.258264)
	pgl (0.236967)
	ece (0.229305)
	spc (0.226732)
	nlu (0.191681)
	mgm (0.180343)
	sin (0.174948)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	isp (0.150376)
	ski (0.146735)
	hyp (0.142837)
	csk (0.140746)
	che (0.136314)
	lyg (0.133103)
	cly (0.120642)