Non-Coding RNA Search

Ss1.1-rcje31_c23.5

Sequence:


               
               TTTTCCTTTGCTATTATTCTTTGTTGCATACTTTTATATTATTTTATTTTACTTTATTTT
ATTTTAGTCTTT------------------------------------------------
------------------------------------------------------------
------------CACAGCTCATGGCAATGCCAGATCTTTAACCCACTAAATGAGGCCAGG
GGTTGAACCTGCATCCTCATGGATACTAGTTAGATTCATTTCTGCTGAGCCACAGCGGGA
ACTCCAATATACATATATTTTAGGTTTACATGTCTGAGAGGTTTCTGTAGTTGGGACTAG
CGTTTGTATACTCAAAGTGGCCTAAGTGTGATGAAAACTTTAAAAACCAACATAACTTCT
TAACGGAATGTTTCTCTGCCTACTTTTTTTTTGTTTTCCCCAGAATACTTTTTAAAAATC
TTTGTATTATGGAAAATTTCCTCTGTATACAGTAGTAGGGAGAATAGTACCCTATATCAA
CAGTCCAGCTTCAACAATTATCAGTTCATGGGCAATTTTGTAAAATAAAAAAATCTATCT
CTTAATCTTACATGTGCAGTGGATTTATCTTACATGTACAGTGGATTATTTGGAAGATAA
TCTTAGAATATTTCACTTATAAATTACAACGACTTTTTATAAATATAGCAATAATAATGT
CATTACCACACCAAAAATTAGATAATTCTTTAACATGTTCAGTGTTCAATTTTTCTGATT
GTCTCACAAAATTTTTTAACTTGTTTTATTTGAATATGAATCCAAATAAAGCCTGGCATT
TGGTTGATATATATTTTTAAATGTATAGTTTCTCTGTTCTGTTTTTCTTTTCAAATTATT
TGCTGAAGAAGTTGTTTGTCCAGTAGAACTTTCCACATGCTGGACATCGATGGCTATATC
CCTATGATGTAATTTACTATAAGATTTGTGGTTTGGGTTCCAGAAAATAGCAATACTGCC
AATTGTTAACATCTGTTTACTGCTTACTACATGACAGGCTGTGTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCTTTGCTATTATTCTTTGTTGCATACTTTTATATTATTTTATTTTACTTTATTTT
ATTTTAGTCTTT------------------------------------------------
------------------------------------------------------------
------------CACAGCTCATGGCAATGCCAGATCTTTAACCCACTAAATGAGGCCAGG
GGTTGAACCTGCATCCTCATGGATACTAGTTAGATTCATTTCTGCTGAGCCACAGCGGGA
ACTCCAATATACATATATTTTAGGTTTACATGTCTGAGAGGTTTCTGTAGTTGGGACTAG
CGTTTGTATACTCAAAGTGGCCTAAGTGTGATGAAAACTTTAAAAACCAACATAACTTCT
TAACGGAATGTTTCTCTGCCTACTTTTTTTTTGTTTTCCCCAGAATACTTTTTAAAAATC
TTTGTATTATGGAAAATTTCCTCTGTATACAGTAGTAGGGAGAATAGTACCCTATATCAA
CAGTCCAGCTTCAACAATTATCAGTTCATGGGCAATTTTGTAAAATAAAAAAATCTATCT
CTTAATCTTACATGTGCAGTGGATTTATCTTACATGTACAGTGGATTATTTGGAAGATAA
TCTTAGAATATTTCACTTATAAATTACAACGACTTTTTATAAATATAGCAATAATAATGT
CATTACCACACCAAAAATTAGATAATTCTTTAACATGTTCAGTGTTCAATTTTTCTGATT
GTCTCACAAAATTTTTTAACTTGTTTTATTTGAATATGAATCCAAATAAAGCCTGGCATT
TGGTTGATATATATTTTTAAATGTATAGTTTCTCTGTTCTGTTTTTCTTTTCAAATTATT
TGCTGAAGAAGTTGTTTGTCCAGTAGAACTTTCCACATGCTGGACATCGATGGCTATATC
CCTATGATGTAATTTACTATAAGATTTGTGGTTTGGGTTCCAGAAAATAGCAATACTGCC
AATTGTTAACATCTGTTTACTGCTTACTACATGACAGGCTGTGTGTGA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               269-948, gnl|bosTau2|chr23 (21200254-21200926)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               269-948, gnl|bosTau2|chr23 (21200254-21200926)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               cje (0.165235)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               tra (0.123092)