Ss1.1-rcje31_d2.5
|
TGCCTGCAGCAAGATGGCGGCGGTGTCAATGTCAGTGGCGCTGAAGCAAGCGTTGTGGGG
GAGAAGGGCAGCGGCTGTAGGTGCCGTTTCTGTTTCCAAGGTTCCGACCAGGTTGTTGAG
CACTTCCACATGGAGACTGGCACAGGACCAAACTCAAGACACACAACTCATAGCGGTTGA
TGAAAAATTGGATATTACCACTTTAACTGGTGTTCCAGAAGAGCATATCAAAACTAGAAA
AGTCAGGATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGGAGTAAACAACACGAAGAA
ATGGAAGATGGAGTTCGATACCAGAGAAAGATGGGAAAATCCTCTGATGGGTTGGTCATC
AACGGCTGATCCCTTGTCCAACTTGGTTCTAACTTTCAGCACTAAAGAAGATGCAGTTGC
CTTTGCAGAAAAAAATGGATGGAGCTTTGATGTTGAAGAGAGAAAGGTTCCAAAACCCAA
GTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGAACAAGAGTATCCACAAAATA
GGTTGGCACTGACTATATCCCTGTGCTTGACTGTGAATGAAGTCAGCTGTGCAGTATTTA
TAGTCTGTGTATAATACATCTCTTAATCTCCTAATAAATTTGACCTTTAAACTACAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGCCTGCAGCAAGATGGCGGCGGTGTCAATGTCAGTGGCGCTGAAGCAAGCGTTGTGGGG
GAGAAGGGCAGCGGCTGTAGGTGCCGTTTCTGTTTCCAAGGTTCCGACCAGGTTGTTGAG
CACTTCCACATGGAGACTGGCACAGGACCAAACTCAAGACACACAACTCATAGCGGTTGA
TGAAAAATTGGATATTACCACTTTAACTGGTGTTCCAGAAGAGCATATCAAAACTAGAAA
AGTCAGGATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGGAGTAAACAACACGAAGAA
ATGGAAGATGGAGTTCGATACCAGAGAAAGATGGGAAAATCCTCTGATGGGTTGGTCATC
AACGGCTGATCCCTTGTCCAACTTGGTTCTAACTTTCAGCACTAAAGAAGATGCAGTTGC
CTTTGCAGAAAAAAATGGATGGAGCTTTGATGTTGAAGAGAGAAAGGTTCCAAAACCCAA
GTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGAACAAGAGTATCCACAAAATA
GGTTGGCACTGACTATATCCCTGTGCTTGACTGTGAATGAAGTCAGCTGTGCAGTATTTA
TAGTCTGTGTATAATACATCTCTTAATCTCCTAATAAATTTGACCTTTAAACTACAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-113, gnl|bosTau2|chr20 (13630883-13630995) |
|
1-113, gnl|canFam2|chr4 (64929693-64929258) |
|
1-113, gnl|dasNov1|scaffold_41314 (13191-12766) |
|
1-113, gnl|echTel1|scaffold_310398 (46590-46979) |
|
1-113, gnl|hg17|chr5 (52892235-52892667) |
|
1-113, gnl|Hg17|chr5 (52892237-52892349) |
|
1-113, gnl|loxAfr1|scaffold_59835 (807-382) |
|
1-113, gnl|mm7|chr13 (111560518-111560152) |
|
1-113, gnl|Mm7|chr13 (111560514-111560402) |
|
1-113, gnl|monDom2|scaffold_27 (15828742-15829191) |
|
1-113, gnl|oryCun1|scaffold_188988 (40109-40520) |
|
1-113, gnl|panTro1|chr4 (63382331-63381905) |
|
1-113, gnl|rheMac2|chr6 (51219346-51219767) |
|
1-113, gnl|rn3|chr2 (46407862-46407484) |
| |
|
190-364, gnl|bosTau2|chr20 (13722673-13722847) |
|
190-364, gnl|Hg17|chr5 (52977819-52977993) |
|
190-364, gnl|Mm7|chr13 (111488857-111488683) |
| |
|
556-660, gnl|bosTau2|chr20 (13745562-13745666) |
|
556-660, gnl|Hg17|chr5 (53014821-53014929) |
|
556-660, gnl|Mm7|chr13 (111460847-111460741) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-113, gnl|bosTau2|chr20 (13630883-13630995) |
|
1-113, gnl|canFam2|chr4 (64929693-64929258) |
|
1-113, gnl|dasNov1|scaffold_41314 (13191-12766) |
|
1-113, gnl|echTel1|scaffold_310398 (46590-46979) |
|
1-113, gnl|hg17|chr5 (52892235-52892667) |
|
1-113, gnl|Hg17|chr5 (52892237-52892349) |
|
1-113, gnl|loxAfr1|scaffold_59835 (807-382) |
|
1-113, gnl|mm7|chr13 (111560518-111560152) |
|
1-113, gnl|Mm7|chr13 (111560514-111560402) |
|
1-113, gnl|monDom2|scaffold_27 (15828742-15829191) |
|
1-113, gnl|oryCun1|scaffold_188988 (40109-40520) |
|
1-113, gnl|panTro1|chr4 (63382331-63381905) |
|
1-113, gnl|rheMac2|chr6 (51219346-51219767) |
|
1-113, gnl|rn3|chr2 (46407862-46407484) |
| |
|
190-364, gnl|bosTau2|chr20 (13722673-13722847) |
|
190-364, gnl|Hg17|chr5 (52977819-52977993) |
|
190-364, gnl|Mm7|chr13 (111488857-111488683) |
| |
|
556-660, gnl|bosTau2|chr20 (13745562-13745666) |
|
556-660, gnl|Hg17|chr5 (53014821-53014929) |
|
556-660, gnl|Mm7|chr13 (111460847-111460741) |
|
che (1.9084) |
|
isp (1.80451) |
|
cbe (1.67464) |
|
bfe (1.34872) |
|
hea (1.22699) |
|
ste (1.21687) |
|
mgp (0.922722) |
|
sme (0.91631) |
|
cst (0.700182) |
|
ece (0.687916) |
|
spc (0.680195) |
|
ssp (0.677599) |
|
vin (0.665115) |
|
cje (0.660939) |
|
nco (0.646935) |
|
sug (0.636456) |
|
thg (0.633955) |
|
aor (0.585823) |
|
lin (0.582411) |
|
gul (0.532765) |
|
ski (0.440205) |
|
nbm (0.397298) |
|
ldo (0.38801) |
|
ova (0.387397) |
|
elu (0.385356) |
|
eep (0.367692) |
|
sag (0.36543) |
|
mgm (0.360685) |
|
eru (0.360144) |
|
sto (0.359648) |
|
sin (0.349895) |
|
med (0.348756) |
|
rec (0.346141) |
|
fhi (0.339155) |
|
fco (0.314416) |
|
lun (0.300978) |
|
fat (0.294855) |
|
cte (0.29274) |
|
pty (0.285429) |
|
csk (0.281492) |
|
hlv (0.278513) |
|
lyg (0.266205) |
|
nmm (0.265604) |
|
kid (0.259471) |
|
ret (0.257467) |
|
ese (0.253004) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
jca (0.22792) |
|
nms (0.213858) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
fty (0.17584) |
|
duo (0.172801) |
|
cut (0.169924) |
|
mga (0.160205) |
|
ctl (0.153069) |
|
eli (0.151814) |
|
cag (0.151194) |
|
nca (0.136874) |
|
pla (0.133672) |
|
cov (0.132153) |
|
bla (0.124347) |
|
tra (0.123092) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
che (1.9084) |
|
isp (1.80451) |
|
cbe (1.67464) |
|
bfe (1.34872) |
|
hea (1.22699) |
|
ste (1.21687) |
|
mgp (0.922722) |
|
sme (0.91631) |
|
cst (0.700182) |
|
ece (0.687916) |
|
spc (0.680195) |
|
ssp (0.677599) |
|
vin (0.665115) |
|
cje (0.660939) |
|
nco (0.646935) |
|
sug (0.636456) |
|
thg (0.633955) |
|
aor (0.585823) |
|
lin (0.582411) |
|
gul (0.532765) |
|
ski (0.440205) |
|
nbm (0.397298) |
|
ldo (0.38801) |
|
ova (0.387397) |
|
elu (0.385356) |
|
eep (0.367692) |
|
sag (0.36543) |
|
mgm (0.360685) |
|
eru (0.360144) |
|
sto (0.359648) |
|
sin (0.349895) |
|
med (0.348756) |
|
rec (0.346141) |
|
fhi (0.339155) |
|
fco (0.314416) |
|
lun (0.300978) |
|
fat (0.294855) |
|
cte (0.29274) |
|
pty (0.285429) |
|
csk (0.281492) |
|
hlv (0.278513) |
|
lyg (0.266205) |
|
nmm (0.265604) |
|
kid (0.259471) |
|
ret (0.257467) |
|
ese (0.253004) |
|
pgl (0.236967) |
|
ebs (0.236602) |
|
jca (0.22792) |
|
nms (0.213858) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
fty (0.17584) |
|
duo (0.172801) |
|
cut (0.169924) |
|
mga (0.160205) |
|
ctl (0.153069) |
|
eli (0.151814) |
|
cag (0.151194) |
|
nca (0.136874) |
|
pla (0.133672) |
|
cov (0.132153) |
|
bla (0.124347) |
|
tra (0.123092) |
|
cty (0.10408) |
|
jej (0.0989218) |
