Non-Coding RNA Search

Ss1.1-rcje31_f18.5

Sequence:


               
               GCGCAGCAGAAGCAAATCCGACTAGGAACCATGAGGTTGCAGGTTCCCGACCCTGGCCTC
GCTGAGTGGGTTAAGGATCCCACATCACCTTGAGCTGTGGTGTAAGTCGTAGACGCGGCC
AGGATCTGGCATTGCTGTGGTGTAGGCCGGCAGCTCCAGTTAGACTGCTAGCCTGGGAAC
CTCCACATGCTATCTGTAAGTGGGAAAACCTGACGTCTCTACAGCCATGTTGAGCAGATC
TTTGCAGATTCGTGCTGGGTTATCTCGAGTGCCAAGAGGACTCTTGATGCTGCGCAGTAA
ATCGCTAAGCTTGGAAACCAAGAAGCATGCATTGCGAGAAGGATCTTCGGAGCGGCATCT
GTCTCTGTGGTAGCCTTGACAACCAGCAGTCAGCAGCCTCCAATCGCACCGAAAACAAGA
AGCCTGAAAACCACAGGAGGGAGCATAATAGGGCTGGAGTCGCTTCAAAGCCTCATTTCC
AGTGAAATGTCATTTGACCTGTCTGATGGTTCCCTTGAAGACATCATTTGAAGGCTGTCT
TTATTTTACCTCAGAGCTCACTCAATGCTAAAAGCCTTTTTCCAAGGAGCATTAAAATTT
TTTTTTTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCAGCAGAAGCAAATCCGACTAGGAACCATGAGGTTGCAGGTTCCCGACCCTGGCCTC
GCTGAGTGGGTTAAGGATCCCACATCACCTTGAGCTGTGGTGTAAGTCGTAGACGCGGCC
AGGATCTGGCATTGCTGTGGTGTAGGCCGGCAGCTCCAGTTAGACTGCTAGCCTGGGAAC
CTCCACATGCTATCTGTAAGTGGGAAAACCTGACGTCTCTACAGCCATGTTGAGCAGATC
TTTGCAGATTCGTGCTGGGTTATCTCGAGTGCCAAGAGGACTCTTGATGCTGCGCAGTAA
ATCGCTAAGCTTGGAAACCAAGAAGCATGCATTGCGAGAAGGATCTTCGGAGCGGCATCT
GTCTCTGTGGTAGCCTTGACAACCAGCAGTCAGCAGCCTCCAATCGCACCGAAAACAAGA
AGCCTGAAAACCACAGGAGGGAGCATAATAGGGCTGGAGTCGCTTCAAAGCCTCATTTCC
AGTGAAATGTCATTTGACCTGTCTGATGGTTCCCTTGAAGACATCATTTGAAGGCTGTCT
TTATTTTACCTCAGAGCTCACTCAATGCTAAAAGCCTTTTTCCAAGGAGCATTAAAATTT
TTTTTTTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               363-614, gnl|bosTau2|chr5 (41573468-41573722)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               363-614, gnl|bosTau2|chr5 (41573468-41573722)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cut (0.339847)
               

               
               hea (0.204499)
               

               
               cje (0.165235)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               hea (0.204499)
               

               
               cje (0.165235)
               

               
               pla (0.133672)