Non-Coding RNA Search

Ss1.1-rcje32_g5.5

Sequence:


               
               ATCATGGCACTCATATTTTTGATTCAGGTGATGGTTTCATTCCATGTAGGGTGGGATGGG
GAGGGAGAGAAAAAAAATCCCATGAGGAGATGATGCAAGAGGATGAACTTGCTTATTAGA
ATAACCTATTTTTCCCATTTTATCTTATAGGCCAGTCTCATCACACAGAGCCGGTTCAGA
GGATGCTAATATAAGCCTTGCCCACCTCTCTCAGCCCATCTTTCTTACTCAGACAGTTTC
CAAGCAGCTCCCTGATGGAGACACACTCTTCCGTTTCCAGGATGAATCGGGCCACGGCTG
TCCCTCCTGGCAGATGGCCGCTTGCTATCTCATGTTTGACACTGTCTAGGACAACACCTC
TGATGTCCTTAGGGTTCCCTGGCACCCCAAAGATGATAAACAGGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATGGCACTCATATTTTTGATTCAGGTGATGGTTTCATTCCATGTAGGGTGGGATGGG
GAGGGAGAGAAAAAAAATCCCATGAGGAGATGATGCAAGAGGATGAACTTGCTTATTAGA
ATAACCTATTTTTCCCATTTTATCTTATAGGCCAGTCTCATCACACAGAGCCGGTTCAGA
GGATGCTAATATAAGCCTTGCCCACCTCTCTCAGCCCATCTTTCTTACTCAGACAGTTTC
CAAGCAGCTCCCTGATGGAGACACACTCTTCCGTTTCCAGGATGAATCGGGCCACGGCTG
TCCCTCCTGGCAGATGGCCGCTTGCTATCTCATGTTTGACACTGTCTAGGACAACACCTC
TGATGTCCTTAGGGTTCCCTGGCACCCCAAAGATGATAAACAGGCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               217-336, - strand, RNAz p=0.86444

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-336, - strand, RNAz p=0.86444

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-406, gnl|bosTau2|chr17 (24177821-24177456)
               

               
               17-406, gnl|Hg17|chr12 (27741617-27741243)
               

               
               17-406, gnl|Mm7|chr6 (147111782-147111446)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-406, gnl|bosTau2|chr17 (24177821-24177456)
               

               
               17-406, gnl|Hg17|chr12 (27741617-27741243)
               

               
               17-406, gnl|Mm7|chr6 (147111782-147111446)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sto (0.359648)
               

               
               cje (0.330469)
               

               
               cst (0.280073)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               cje (0.330469)
               

               
               cst (0.280073)

	17-406, gnl\|bosTau2\|chr17 (24177821-24177456)
	17-406, gnl\|Hg17\|chr12 (27741617-27741243)
	17-406, gnl\|Mm7\|chr6 (147111782-147111446)