Ss1.1-rcje38_h6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTGCGAGGCAGCGGCAGTGGCGGCGGCAGCGGCGGCTGGAGCCTCTGATTGGGTTTC GGGGTCCGGTACTGGAGCCAATCAGCGCGGGCAGCGAACCGGGGGAGCGAGGCACGGAGT ACATCTCAAAGTCTTCTAGGATCTCCAGAGTGAAACTAACTGTGGACAGGACTCTGACTT GGAGAGACCATGGAACAGTATACAACAAACAGCAATAGTTCAACAGAGCAGATTGTTGTG CAGGCTGGACAAATTCAACAGCAGCAGCAGGGTGGTGTCACTGCTGTCCAGCTGCAGACT GAGGCCCAGGTGGCATCTGCCTCAGGCCAGCAAGTCCAGACCCTCCAGGTAGTCCAGGGG CAGCCATTAATGGTACAGGTCAGTGGAGGTCAGTTAATAACATCAACTGGCCAACCCATC ATGGTCCAGGCTGTTCCTGGTGGACAAGGTCAAACCATCATGCAAGTACCTGTGTCTGGG ACACAGGGTTTGCAACAGATACAGTTGGTCCCACCTGGGCAGATCCAGATCCAGGGTGGG CAGGCTGTGCAGGTTCAGGGTCAGCAGGGCCAGACCCAGCAGATCATCATCCAGCAGCCC CAGACTGCTGTTACTGCTGGCCAGACACAGACACAGCAGCAGATCGCTGTCCAGGGGCAG CAAGTGGCACAGACTGCTGAGGGACAGACCATCGTCTATCAGCCAGTCAATGCAGATGGC ACCATTCTCCAGCAAGGCATGATCACCATCCCTGCAGCCAGTTTGGCAGGAGCACAGATT GTTCAGACGGGAGCCAACACCAACACAACCAGCAGTGGGCAAGGAACTGTCACGGTGACA CTACCAGTGGCAGGCAATGTGGTCAATTCAGGAGGGATGGTCATGATGGTACCTGGTGCT GGCTCTGTGCCTGCTATCCAAAGAATCCCTCTTCCCGGGGCAGAGATGCTTGAAGAAGAG CCTCTCTATGTGAATGCCAAACAGTACCACCGTATTCTTAAGAGGAGGCAAGCCCGGGCT AAATTAGAGGCAGAAGGGAAAATTCCAAAGGAAAGAAGGAAATACCTGCATGAGTCTCGG CACCGTCATGCCATGGCCCGGAAGCGTGGTGAAGGTGGACGATTTTTCTCTCCAAAGGAA AAAGACAGTCCCCATATGCAGGATCCAAATCAAGCAGATGAAGAGGCTATGACACAGATC ATCCGAGTGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTGCGAGGCAGCGGCAGTGGCGGCGGCAGCGGCGGCTGGAGCCTCTGATTGGGTTTC GGGGTCCGGTACTGGAGCCAATCAGCGCGGGCAGCGAACCGGGGGAGCGAGGCACGGAGT ACATCTCAAAGTCTTCTAGGATCTCCAGAGTGAAACTAACTGTGGACAGGACTCTGACTT GGAGAGACCATGGAACAGTATACAACAAACAGCAATAGTTCAACAGAGCAGATTGTTGTG CAGGCTGGACAAATTCAACAGCAGCAGCAGGGTGGTGTCACTGCTGTCCAGCTGCAGACT GAGGCCCAGGTGGCATCTGCCTCAGGCCAGCAAGTCCAGACCCTCCAGGTAGTCCAGGGG CAGCCATTAATGGTACAGGTCAGTGGAGGTCAGTTAATAACATCAACTGGCCAACCCATC ATGGTCCAGGCTGTTCCTGGTGGACAAGGTCAAACCATCATGCAAGTACCTGTGTCTGGG ACACAGGGTTTGCAACAGATACAGTTGGTCCCACCTGGGCAGATCCAGATCCAGGGTGGG CAGGCTGTGCAGGTTCAGGGTCAGCAGGGCCAGACCCAGCAGATCATCATCCAGCAGCCC CAGACTGCTGTTACTGCTGGCCAGACACAGACACAGCAGCAGATCGCTGTCCAGGGGCAG CAAGTGGCACAGACTGCTGAGGGACAGACCATCGTCTATCAGCCAGTCAATGCAGATGGC ACCATTCTCCAGCAAGGCATGATCACCATCCCTGCAGCCAGTTTGGCAGGAGCACAGATT GTTCAGACGGGAGCCAACACCAACACAACCAGCAGTGGGCAAGGAACTGTCACGGTGACA CTACCAGTGGCAGGCAATGTGGTCAATTCAGGAGGGATGGTCATGATGGTACCTGGTGCT GGCTCTGTGCCTGCTATCCAAAGAATCCCTCTTCCCGGGGCAGAGATGCTTGAAGAAGAG CCTCTCTATGTGAATGCCAAACAGTACCACCGTATTCTTAAGAGGAGGCAAGCCCGGGCT AAATTAGAGGCAGAAGGGAAAATTCCAAAGGAAAGAAGGAAATACCTGCATGAGTCTCGG CACCGTCATGCCATGGCCCGGAAGCGTGGTGAAGGTGGACGATTTTTCTCTCCAAAGGAA AAAGACAGTCCCCATATGCAGGATCCAAATCAAGCAGATGAAGAGGCTATGACACAGATC ATCCGAGTGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 381-498, - strand, RNAz p=0.898825 | |
| 646-742, + strand, RNAz p=0.748347 | |
| 924-1043, - strand, RNAz p=0.887416 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 381-498, - strand, RNAz p=0.898825 | |
| 646-742, + strand, RNAz p=0.748347 | |
| 924-1043, - strand, RNAz p=0.887416 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-117, gnl|bosTau2|chr23 (14333432-14333316) | |
| 1-117, gnl|Hg17|chr6 (41148686-41148802) | |
| 1-117, gnl|Mm7|chr17 (46555465-46555349) | |
| 352-498, gnl|bosTau2|chr23 (14322599-14322453) | |
| 352-498, gnl|canFam2|chr12 (12844588-12844745) | |
| 352-498, gnl|danRer3|chr11 (38550119-38550276) | |
| 352-498, gnl|dasNov1|scaffold_19596 (17262-17105) | |
| 352-498, gnl|echTel1|scaffold_276984 (38997-38840) | |
| 352-498, gnl|fr1|chrUn (284181568-284181725) | |
| 352-498, gnl|galGal2|chr26 (3266184-3266339) | |
| 352-498, gnl|hg17|chr6 (41159761-41159918) | |
| 352-498, gnl|Hg17|chr6 (41159763-41159909) | |
| 352-498, gnl|loxAfr1|scaffold_253 (89244-89098) | |
| 352-498, gnl|mm7|chr17 (46540415-46540258) | |
| 352-498, gnl|Mm7|chr17 (46540411-46540265) | |
| 352-498, gnl|monDom2|scaffold_42 (2467736-2467579) | |
| 352-498, gnl|panTro1|chr5 (41731910-41732067) | |
| 352-498, gnl|rheMac2|chr4 (40907267-40907424) | |
| 352-498, gnl|rn3|chr9 (7983763-7983920) | |
| 352-498, gnl|tetNig1|chr9 (2961720-2961877) | |
| 352-498, gnl|xenTro1|scaffold_19 (1840019-1839849) | |
| 628-742, gnl|bosTau2|chr23 (14317185-14317071) | |
| 628-742, gnl|canFam2|chr12 (12851469-12851599) | |
| 628-742, gnl|danRer3|chr11 (38552211-38552337) | |
| 628-742, gnl|dasNov1|scaffold_19596 (12408-12278) | |
| 628-742, gnl|echTel1|scaffold_276984 (32131-32002) | |
| 628-742, gnl|fr1|chrUn (284182271-284182391) | |
| 628-742, gnl|galGal2|chr26 (3268255-3268372) | |
| 628-742, gnl|hg17|chr6 (41165913-41166043) | |
| 628-742, gnl|Hg17|chr6 (41165918-41166032) | |
| 628-742, gnl|loxAfr1|scaffold_69355 (793-922) | |
| 628-742, gnl|mm7|chr17 (46537907-46537782) | |
| 628-742, gnl|Mm7|chr17 (46537903-46537790) | |
| 628-742, gnl|monDom2|scaffold_42 (2463252-2463113) | |
| 628-742, gnl|oryCun1|scaffold_206799 (86256-86385) | |
| 628-742, gnl|panTro1|chr5 (41738068-41738198) | |
| 628-742, gnl|rheMac2|chr4 (40913483-40913613) | |
| 628-742, gnl|rn3|chr9 (7986310-7986427) | |
| 628-742, gnl|tetNig1|chr9 (2962406-2962521) | |
| 628-742, gnl|xenTro1|scaffold_19 (1836961-1836825) | |
| 885-1059, gnl|bosTau2|chr23 (14314463-14314289) | |
| 885-1059, gnl|canFam2|chr12 (12854538-12854736) | |
| 885-1059, gnl|danRer3|chr11 (38554952-38555147) | |
| 885-1059, gnl|dasNov1|scaffold_19596 (10176-9978) | |
| 885-1059, gnl|echTel1|scaffold_167993 (10480-10284) | |
| 885-1059, gnl|fr1|chrUn (284182901-284183083) | |
| 885-1059, gnl|galGal2|chr26 (3269819-3270042) | |
| 885-1059, gnl|hg17|chr6 (41168621-41168819) | |
| 885-1059, gnl|Hg17|chr6 (41168628-41168802) | |
| 885-1059, gnl|loxAfr1|scaffold_69355 (3279-3476) | |
| 885-1059, gnl|mm7|chr17 (46536674-46536476) | |
| 885-1059, gnl|Mm7|chr17 (46536665-46536491) | |
| 885-1059, gnl|monDom2|scaffold_42 (2459146-2458948) | |
| 885-1059, gnl|oryCun1|scaffold_206799 (88845-89043) | |
| 885-1059, gnl|panTro1|chr5 (41740793-41740991) | |
| 885-1059, gnl|rheMac2|chr4 (40916189-40916387) | |
| 885-1059, gnl|rn3|chr9 (7987552-7987750) | |
| 885-1059, gnl|tetNig1|chr9 (2963024-2963206) | |
| 885-1059, gnl|xenTro1|scaffold_19 (1836164-1835966) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-117, gnl|bosTau2|chr23 (14333432-14333316) | |
| 1-117, gnl|Hg17|chr6 (41148686-41148802) | |
| 1-117, gnl|Mm7|chr17 (46555465-46555349) | |
| 352-498, gnl|bosTau2|chr23 (14322599-14322453) | |
| 352-498, gnl|canFam2|chr12 (12844588-12844745) | |
| 352-498, gnl|danRer3|chr11 (38550119-38550276) | |
| 352-498, gnl|dasNov1|scaffold_19596 (17262-17105) | |
| 352-498, gnl|echTel1|scaffold_276984 (38997-38840) | |
| 352-498, gnl|fr1|chrUn (284181568-284181725) | |
| 352-498, gnl|galGal2|chr26 (3266184-3266339) | |
| 352-498, gnl|hg17|chr6 (41159761-41159918) | |
| 352-498, gnl|Hg17|chr6 (41159763-41159909) | |
| 352-498, gnl|loxAfr1|scaffold_253 (89244-89098) | |
| 352-498, gnl|mm7|chr17 (46540415-46540258) | |
| 352-498, gnl|Mm7|chr17 (46540411-46540265) | |
| 352-498, gnl|monDom2|scaffold_42 (2467736-2467579) | |
| 352-498, gnl|panTro1|chr5 (41731910-41732067) | |
| 352-498, gnl|rheMac2|chr4 (40907267-40907424) | |
| 352-498, gnl|rn3|chr9 (7983763-7983920) | |
| 352-498, gnl|tetNig1|chr9 (2961720-2961877) | |
| 352-498, gnl|xenTro1|scaffold_19 (1840019-1839849) | |
| 628-742, gnl|bosTau2|chr23 (14317185-14317071) | |
| 628-742, gnl|canFam2|chr12 (12851469-12851599) | |
| 628-742, gnl|danRer3|chr11 (38552211-38552337) | |
| 628-742, gnl|dasNov1|scaffold_19596 (12408-12278) | |
| 628-742, gnl|echTel1|scaffold_276984 (32131-32002) | |
| 628-742, gnl|fr1|chrUn (284182271-284182391) | |
| 628-742, gnl|galGal2|chr26 (3268255-3268372) | |
| 628-742, gnl|hg17|chr6 (41165913-41166043) | |
| 628-742, gnl|Hg17|chr6 (41165918-41166032) | |
| 628-742, gnl|loxAfr1|scaffold_69355 (793-922) | |
| 628-742, gnl|mm7|chr17 (46537907-46537782) | |
| 628-742, gnl|Mm7|chr17 (46537903-46537790) | |
| 628-742, gnl|monDom2|scaffold_42 (2463252-2463113) | |
| 628-742, gnl|oryCun1|scaffold_206799 (86256-86385) | |
| 628-742, gnl|panTro1|chr5 (41738068-41738198) | |
| 628-742, gnl|rheMac2|chr4 (40913483-40913613) | |
| 628-742, gnl|rn3|chr9 (7986310-7986427) | |
| 628-742, gnl|tetNig1|chr9 (2962406-2962521) | |
| 628-742, gnl|xenTro1|scaffold_19 (1836961-1836825) | |
| 885-1059, gnl|bosTau2|chr23 (14314463-14314289) | |
| 885-1059, gnl|canFam2|chr12 (12854538-12854736) | |
| 885-1059, gnl|danRer3|chr11 (38554952-38555147) | |
| 885-1059, gnl|dasNov1|scaffold_19596 (10176-9978) | |
| 885-1059, gnl|echTel1|scaffold_167993 (10480-10284) | |
| 885-1059, gnl|fr1|chrUn (284182901-284183083) | |
| 885-1059, gnl|galGal2|chr26 (3269819-3270042) | |
| 885-1059, gnl|hg17|chr6 (41168621-41168819) | |
| 885-1059, gnl|Hg17|chr6 (41168628-41168802) | |
| 885-1059, gnl|loxAfr1|scaffold_69355 (3279-3476) | |
| 885-1059, gnl|mm7|chr17 (46536674-46536476) | |
| 885-1059, gnl|Mm7|chr17 (46536665-46536491) | |
| 885-1059, gnl|monDom2|scaffold_42 (2459146-2458948) | |
| 885-1059, gnl|oryCun1|scaffold_206799 (88845-89043) | |
| 885-1059, gnl|panTro1|chr5 (41740793-41740991) | |
| 885-1059, gnl|rheMac2|chr4 (40916189-40916387) | |
| 885-1059, gnl|rn3|chr9 (7987552-7987750) | |
| 885-1059, gnl|tetNig1|chr9 (2963024-2963206) | |
| 885-1059, gnl|xenTro1|scaffold_19 (1836164-1835966) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| eep (0.122564) |