Non-Coding RNA Search

Ss1.1-rcje38_i8.5

Sequence:


               
               GTCTTACATTAAAACCCCAGGATGGCTGCTGAGGGGTAAACAGTCCCCAATATTTGGGGT
GGTCTGATACCCCTTCCCCACCCACAAGGGGCCCCCTTGATGATTTCTGTGAAATCGAGG
CCCCTTGATTGTTTCTGTGAAACACCCTGGACCCCTAACCCTTTCCCCACCAGGATCTTT
TGGGGTCCCTTCCCCTAACTCAGCTCTTTATACCTGGAACCCCAGGTGTAACTCCCCTAT
ACAGTACTGGGGTACCCCCAAAACAGCTTCTAGTACCATCCCAGTAGCACTCCTCAGGTG
ACCCCCTAACCTCTCCGGGACCCCTTCCCTTCAGGTCTTTAACCCTGAGACATAGGAAGG
ACCTTCTTTGATTAGGGTCCTACTGCTTTTTGACTCAGAACTGAACAGGGCCCCTGCCCC
AGACCCCAGTATTTCCAGTGAGTCCCTCTGTCTGAAACTCCTATTAAAGTCAATATGGAC
TAGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTACATTAAAACCCCAGGATGGCTGCTGAGGGGTAAACAGTCCCCAATATTTGGGGT
GGTCTGATACCCCTTCCCCACCCACAAGGGGCCCCCTTGATGATTTCTGTGAAATCGAGG
CCCCTTGATTGTTTCTGTGAAACACCCTGGACCCCTAACCCTTTCCCCACCAGGATCTTT
TGGGGTCCCTTCCCCTAACTCAGCTCTTTATACCTGGAACCCCAGGTGTAACTCCCCTAT
ACAGTACTGGGGTACCCCCAAAACAGCTTCTAGTACCATCCCAGTAGCACTCCTCAGGTG
ACCCCCTAACCTCTCCGGGACCCCTTCCCTTCAGGTCTTTAACCCTGAGACATAGGAAGG
ACCTTCTTTGATTAGGGTCCTACTGCTTTTTGACTCAGAACTGAACAGGGCCCCTGCCCC
AGACCCCAGTATTTCCAGTGAGTCCCTCTGTCTGAAACTCCTATTAAAGTCAATATGGAC
TAGAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-420, - strand, RNAz p=0.999408

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-420, - strand, RNAz p=0.999408

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-485, gnl|bosTau2|chr18 (41700021-41699538)
               

               
               1-485, gnl|Hg17|chr19 (41071186-41070693)
               

               
               1-485, gnl|Mm7|chr7 (27371514-27371961)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-485, gnl|bosTau2|chr18 (41700021-41699538)
               

               
               1-485, gnl|Hg17|chr19 (41071186-41070693)
               

               
               1-485, gnl|Mm7|chr7 (27371514-27371961)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sag (0.182715)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

	1-485, gnl\|bosTau2\|chr18 (41700021-41699538)
	1-485, gnl\|Hg17\|chr19 (41071186-41070693)
	1-485, gnl\|Mm7\|chr7 (27371514-27371961)

	sag (0.182715)
	cje (0.165235)
	lnt (0.142308)
	ese (0.126502)
	cly (0.120642)
	nbm (0.0993246)