Non-Coding RNA Search

Ss1.1-rcje38_i9.5

Sequence:


               
               GACAAAGCCGAGGAGGACAGCCAGGATGAAGAGGAAGAAGAGGACTCCTCTGACTCCGAC
TTTCCAGGGGAACTCTCGGGGTTTCGTAGGACTACATATCCTGTCTACAGTTCCATCGAG
GCTGCAGAGCTGGCAGAAAGGATTGAGCGCAGGGAGCAAATCATCCAGGAAATATGGATG
AACAGTGGTTTGGACACGTCACTCCCAAGAAACATGAGCCAGTTCTACTGAAGCACAGAT
ACATTTTGATGCCCAGCTACGGAAGAGGGAAGGAGCCAAAATGCCCCTCCAGTTCTGTTT
CACTTGTACCTTCTATGAAGGAGAATTTGTCACGTTGTCAGTACTGGGGAAGCCAGCATG
CTCTTAAAGGGACATGTCAAACTGTTTACAGCACATTTTAAAATAAATTAGGAGGGAACA
AGTCTTTGTTTCTTGTATTTATTTAAATTCAGGTCTATATGATAACAGAATTAGAGTTCA
TATTTATCAAGTACCCTGTTTATCAAGCCAGGCACTGTTCTAGCTTTTCACATATTAAAA
CATTTAACACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAAGCCGAGGAGGACAGCCAGGATGAAGAGGAAGAAGAGGACTCCTCTGACTCCGAC
TTTCCAGGGGAACTCTCGGGGTTTCGTAGGACTACATATCCTGTCTACAGTTCCATCGAG
GCTGCAGAGCTGGCAGAAAGGATTGAGCGCAGGGAGCAAATCATCCAGGAAATATGGATG
AACAGTGGTTTGGACACGTCACTCCCAAGAAACATGAGCCAGTTCTACTGAAGCACAGAT
ACATTTTGATGCCCAGCTACGGAAGAGGGAAGGAGCCAAAATGCCCCTCCAGTTCTGTTT
CACTTGTACCTTCTATGAAGGAGAATTTGTCACGTTGTCAGTACTGGGGAAGCCAGCATG
CTCTTAAAGGGACATGTCAAACTGTTTACAGCACATTTTAAAATAAATTAGGAGGGAACA
AGTCTTTGTTTCTTGTATTTATTTAAATTCAGGTCTATATGATAACAGAATTAGAGTTCA
TATTTATCAAGTACCCTGTTTATCAAGCCAGGCACTGTTCTAGCTTTTCACATATTAAAA
CATTTAACACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8CAX0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CAX0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.687409

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.687409

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY040087, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY040087, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-550, gnl|bosTau2|chr1 (270914-271466)
               

               
               1-550, gnl|Hg17|chr21 (32809141-32809701)
               

               
               1-550, gnl|Mm7|chr16 (90954151-90954662)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-550, gnl|bosTau2|chr1 (270914-271466)
               

               
               1-550, gnl|Hg17|chr21 (32809141-32809701)
               

               
               1-550, gnl|Mm7|chr16 (90954151-90954662)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               bla (0.248694)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

	1-550, gnl\|bosTau2\|chr1 (270914-271466)
	1-550, gnl\|Hg17\|chr21 (32809141-32809701)
	1-550, gnl\|Mm7\|chr16 (90954151-90954662)