Non-Coding RNA Search

Ss1.1-rcje39_h5.5

Sequence:


               
               CCTGACGGTATGTCTGTGACNCCATGTTNAAATTTGCATGAGNTGGCATGCCTGGGAGCA
TTTAGAGCCCAAGAACTTTGTGTCTGTGTACGTGTNCCTGGGAAGAACACTTAATGCCTA
TTTTTATATNCCTGTGGGTGTTTGAANCCTGTGCCCATCGGTATGTAAATATGCCAGATT
CTGTGAGTATAGGTAAGAATACATCTGGGTGAACCAGGACACTGTGGATATGATTTGAAT
TTAGAAGCTGAGGAGTAGGGGAGAGAGGACATTCTAAGGGAGAAATTAATGGTAGTAGAA
AGTAGGATTACTGGACTATGGGCTATAGTATGAAAATTAAAATAAAAAACTCTTGAGGCT
TAAAAAGAGGATACGTCTGGGCACATATGGGTACACGGAGTTGTGGGTGCAGGACCCTCA
CCTTCTTGAGAGTTTCTTCTGACCTCGCTGTCACCACCACATGGGCTCCCATCCTCGCCA
GATGATAGGCCATCTCTCTTCCGATCCCCTTGCTGGCCCCTGTGACAATCACTTTCTTTC
CTCGAAGCATCTCTGGGAAACCCCACAAGGAAGTGAGGACCACACTCAGCCGCAGAAGTC
CTTCCCCTGCTCTGGGGGTGGGCAGCCTTGTCTCAATGTCTCAAGGCTATGAGCCCAGAT
CAACTCATCTCAAACCATGTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGACGGTATGTCTGTGACNCCATGTTNAAATTTGCATGAGNTGGCATGCCTGGGAGCA
TTTAGAGCCCAAGAACTTTGTGTCTGTGTACGTGTNCCTGGGAAGAACACTTAATGCCTA
TTTTTATATNCCTGTGGGTGTTTGAANCCTGTGCCCATCGGTATGTAAATATGCCAGATT
CTGTGAGTATAGGTAAGAATACATCTGGGTGAACCAGGACACTGTGGATATGATTTGAAT
TTAGAAGCTGAGGAGTAGGGGAGAGAGGACATTCTAAGGGAGAAATTAATGGTAGTAGAA
AGTAGGATTACTGGACTATGGGCTATAGTATGAAAATTAAAATAAAAAACTCTTGAGGCT
TAAAAAGAGGATACGTCTGGGCACATATGGGTACACGGAGTTGTGGGTGCAGGACCCTCA
CCTTCTTGAGAGTTTCTTCTGACCTCGCTGTCACCACCACATGGGCTCCCATCCTCGCCA
GATGATAGGCCATCTCTCTTCCGATCCCCTTGCTGGCCCCTGTGACAATCACTTTCTTTC
CTCGAAGCATCTCTGGGAAACCCCACAAGGAAGTGAGGACCACACTCAGCCGCAGAAGTC
CTTCCCCTGCTCTGGGGGTGGGCAGCCTTGTCTCAATGTCTCAAGGCTATGAGCCCAGAT
CAACTCATCTCAAACCATGTAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|254213|gb|AAB22993.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|254213|gb|AAB22993.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               518-632, + strand, RNAz p=0.769029

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               518-632, + strand, RNAz p=0.769029

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               9-153, gnl|bosTau2|chr16 (51091578-51091432)
               

               
               9-153, gnl|Hg17|chr1 (206267991-206267807)
               


               
               210-346, gnl|bosTau2|chr24 (35396383-35396248)
               

               
               210-346, gnl|Hg17|chr18 (50687799-50687930)
               


               
               358-684, gnl|bosTau2|chr16 (51091365-51091041)
               

               
               358-684, gnl|Hg17|chr1 (206267744-206267409)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-153, gnl|bosTau2|chr16 (51091578-51091432)
               

               
               9-153, gnl|Hg17|chr1 (206267991-206267807)
               


               
               210-346, gnl|bosTau2|chr24 (35396383-35396248)
               

               
               210-346, gnl|Hg17|chr18 (50687799-50687930)
               


               
               358-684, gnl|bosTau2|chr16 (51091365-51091041)
               

               
               358-684, gnl|Hg17|chr1 (206267744-206267409)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	9-153, gnl\|bosTau2\|chr16 (51091578-51091432)
	9-153, gnl\|Hg17\|chr1 (206267991-206267807)

	210-346, gnl\|bosTau2\|chr24 (35396383-35396248)
	210-346, gnl\|Hg17\|chr18 (50687799-50687930)

	358-684, gnl\|bosTau2\|chr16 (51091365-51091041)
	358-684, gnl\|Hg17\|chr1 (206267744-206267409)