Ss1.1-rcki012_o17.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GACGGCAGCGCCGAGGGACGATCGGGCAGCGCCGCCGCCATGTCCCTGGGCGCTGGGGAC CCGGCCTCGGAGACGGGGGATGACAGTCTGTCTGCAATCACCTTCGACTCGGACTCTGAG ACGAAAGCAAAAAGGAAGAGTTTCCACAAACCTCCGCCCACGTCACCGAAGTCCCCTTAT CACTCTAAGCCGAGAAAAGTGGCCTCCTGGAGAGCTCTGAGGACGCCAGCCAGCATGCCT CTTGGGAGCAGGATGTCCTTGACGCCCCAGAAGCTGTGGCTGGGAAGCTCAAAGCAAGGT TTCGTTCCCGGGACCCCCGTCTACAGAGAGAAGGAGGACATGTACGACGAGATCATTGAG CTGAAGAAGTCATTACACACGCAAAAAAGTGATGTGGATCTGATGAGGACAAAGCTTCGG TCTGCCAGCCACGAGAACAGCAGAAAGGACCGGCAGATAGAGCAGCTTTTGGAGCCATCC CGAGGCCCGGAATTTGTTCGGACTCTGGCAGAGAAAAGGCCTGATGCTGGCTGGGACTAT GTCTCGAGAAAAACCCCGTCTCCTCCCCTGGCTACTACAAGGATATTTGCAGTACAACAT CAAAGCCAGGAGATGGATTTCAGTGCAAAATGTGCGTGTAGCTCTGTGTTGTGTTAGCAC GTGTGCAGATCCGTGTAGCCAGGACTGCAGTCAAGTGCAGTCAAGACACAGAACGGTCCC CTCCGCAGAGAGCCTCTCTCGCTGGCCGGTGATGGTCACACTCCCCCCCGCTGCCCCAGC CCACCGCCCCGCACTCCTGGAAACTGTTTCCTGCACTATTTGCCCGGGGTGGAGCAGCTA TTGTGTTGCATTTTCTGCCTCGTT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GACGGCAGCGCCGAGGGACGATCGGGCAGCGCCGCCGCCATGTCCCTGGGCGCTGGGGAC CCGGCCTCGGAGACGGGGGATGACAGTCTGTCTGCAATCACCTTCGACTCGGACTCTGAG ACGAAAGCAAAAAGGAAGAGTTTCCACAAACCTCCGCCCACGTCACCGAAGTCCCCTTAT CACTCTAAGCCGAGAAAAGTGGCCTCCTGGAGAGCTCTGAGGACGCCAGCCAGCATGCCT CTTGGGAGCAGGATGTCCTTGACGCCCCAGAAGCTGTGGCTGGGAAGCTCAAAGCAAGGT TTCGTTCCCGGGACCCCCGTCTACAGAGAGAAGGAGGACATGTACGACGAGATCATTGAG CTGAAGAAGTCATTACACACGCAAAAAAGTGATGTGGATCTGATGAGGACAAAGCTTCGG TCTGCCAGCCACGAGAACAGCAGAAAGGACCGGCAGATAGAGCAGCTTTTGGAGCCATCC CGAGGCCCGGAATTTGTTCGGACTCTGGCAGAGAAAAGGCCTGATGCTGGCTGGGACTAT GTCTCGAGAAAAACCCCGTCTCCTCCCCTGGCTACTACAAGGATATTTGCAGTACAACAT CAAAGCCAGGAGATGGATTTCAGTGCAAAATGTGCGTGTAGCTCTGTGTTGTGTTAGCAC GTGTGCAGATCCGTGTAGCCAGGACTGCAGTCAAGTGCAGTCAAGACACAGAACGGTCCC CTCCGCAGAGAGCCTCTCTCGCTGGCCGGTGATGGTCACACTCCCCCCCGCTGCCCCAGC CCACCGCCCCGCACTCCTGGAAACTGTTTCCTGCACTATTTGCCCGGGGTGGAGCAGCTA TTGTGTTGCATTTTCTGCCTCGTT |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 27 entry(ies) | More info |
Aligned organism(s): 27 entry(ies) | Help | Less info |
170-300, gnl|bosTau2|chr25 (38997519-38997649) | |
170-300, gnl|canFam2|chr6 (17552606-17552736) | |
170-300, gnl|dasNov1|scaffold_41995 (5459-5329) | |
170-300, gnl|echTel1|scaffold_295295 (4645-4776) | |
170-300, gnl|hg17|chr7 (2384398-2384528) | |
170-300, gnl|Hg17|chr7 (2384401-2384531) | |
170-300, gnl|loxAfr1|scaffold_38975 (10301-10430) | |
170-300, gnl|mm7|chr5 (139664506-139664376) | |
170-300, gnl|Mm7|chr5 (139664501-139664371) | |
170-300, gnl|monDom2|scaffold_17 (913391-913261) | |
170-300, gnl|panTro1|chr6 (2589343-2589473) | |
170-300, gnl|rheMac2|chr3 (40645582-40645452) | |
170-300, gnl|rn3|chr12 (14451396-14451526) | |
368-484, gnl|bosTau2|chr25 (39001632-39001748) | |
368-484, gnl|canFam2|chr6 (17559357-17559478) | |
368-484, gnl|dasNov1|scaffold_205769 (571-693) | |
368-484, gnl|echTel1|scaffold_206688 (6927-7031) | |
368-484, gnl|hg17|chr7 (2391116-2391238) | |
368-484, gnl|Hg17|chr7 (2391115-2391231) | |
368-484, gnl|loxAfr1|scaffold_29439 (16524-16402) | |
368-484, gnl|mm7|chr5 (139661030-139660908) | |
368-484, gnl|Mm7|chr5 (139661029-139660913) | |
368-484, gnl|monDom2|scaffold_17 (903651-903529) | |
368-484, gnl|panTro1|chr6 (2595663-2595785) | |
368-484, gnl|rheMac2|chr3 (40639614-40639492) | |
368-484, gnl|rn3|chr12 (14456058-14456179) | |
368-484, gnl|tetNig1|chr18 (8777526-8777646) |
Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
170-300, gnl|bosTau2|chr25 (38997519-38997649) | |
170-300, gnl|canFam2|chr6 (17552606-17552736) | |
170-300, gnl|dasNov1|scaffold_41995 (5459-5329) | |
170-300, gnl|echTel1|scaffold_295295 (4645-4776) | |
170-300, gnl|hg17|chr7 (2384398-2384528) | |
170-300, gnl|Hg17|chr7 (2384401-2384531) | |
170-300, gnl|loxAfr1|scaffold_38975 (10301-10430) | |
170-300, gnl|mm7|chr5 (139664506-139664376) | |
170-300, gnl|Mm7|chr5 (139664501-139664371) | |
170-300, gnl|monDom2|scaffold_17 (913391-913261) | |
170-300, gnl|panTro1|chr6 (2589343-2589473) | |
170-300, gnl|rheMac2|chr3 (40645582-40645452) | |
170-300, gnl|rn3|chr12 (14451396-14451526) | |
368-484, gnl|bosTau2|chr25 (39001632-39001748) | |
368-484, gnl|canFam2|chr6 (17559357-17559478) | |
368-484, gnl|dasNov1|scaffold_205769 (571-693) | |
368-484, gnl|echTel1|scaffold_206688 (6927-7031) | |
368-484, gnl|hg17|chr7 (2391116-2391238) | |
368-484, gnl|Hg17|chr7 (2391115-2391231) | |
368-484, gnl|loxAfr1|scaffold_29439 (16524-16402) | |
368-484, gnl|mm7|chr5 (139661030-139660908) | |
368-484, gnl|Mm7|chr5 (139661029-139660913) | |
368-484, gnl|monDom2|scaffold_17 (903651-903529) | |
368-484, gnl|panTro1|chr6 (2595663-2595785) | |
368-484, gnl|rheMac2|chr3 (40639614-40639492) | |
368-484, gnl|rn3|chr12 (14456058-14456179) | |
368-484, gnl|tetNig1|chr18 (8777526-8777646) |
Expressed library(ies): 4 entry(ies) | More info |
Expressed library(ies): 4 entry(ies) | Help | Less info |
fty (0.17584) | |
cki (0.165235) | |
cst (0.140036) | |
med (0.116252) |
Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
fty (0.17584) | |
cki (0.165235) | |
cst (0.140036) | |
med (0.116252) |