Ss1.1-rcki012_o7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTTCGACGAGCTGAAGGAGCAGAACCAGAGCATGGACATCTCTCTGACCAAGCTGGAC AACCACTGCGAGCTGCTCTCTCGCCTCAAGGGGAACTTGGAGGAAGAAAACCACCACCTC CTGAGTCAGATCCAGCTGCTGAGCCAGCAGAACCAGATGCTCCTAGAGCAGAACTTGGAG AACAAGGAGCAGTACCACGAGGAGCAGAAGCAATACATAGACAAGTTAAATGCCTTACGG AGACATAAGGAAAAACTGGAAGAAAAAATCATGGATCAGTACAAGTTCTATGATCCTGCT CCAAAGAAGAAAAACCACTGGATTGGAGCCAAAGCCTTAGTCAAACTCATCAAACCAAAG AAGGAGGGTTCCAGAGACCGAGTGAAGTCAACCACAGACAGCCCGCCCCCGCAGCTGGAG TCCCCGGACCCCACCTCGACACCCGCTTCTCAGCCTCTCAGATCTCAGCCCGAGAATCCC GAGTCCACCCCGTCGGGCTCCAGCTGTGCAGATGAGCATGATGCCCACAATGGGCCCCTG GGAAAAGCTCAGCGCAAAAAGAGTCCCTTTTTGAGAAGCAAAAGCAAAGACAAAGACAAG TTTCCAGCGGCCCACCCGGCTCTCTTTAAACGCCTGCGGTTTTGGTCTTCCCCTGACATC CCATCCTAACAAAATCGAGCCTCTCCCTTTTCCAGAAATGGGAGACTTCTAATCCTTTCC CTTTAGCATGTGTCTTCATCGTGTACCCTCCTCCATCTTTGAAACTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTTCGACGAGCTGAAGGAGCAGAACCAGAGCATGGACATCTCTCTGACCAAGCTGGAC AACCACTGCGAGCTGCTCTCTCGCCTCAAGGGGAACTTGGAGGAAGAAAACCACCACCTC CTGAGTCAGATCCAGCTGCTGAGCCAGCAGAACCAGATGCTCCTAGAGCAGAACTTGGAG AACAAGGAGCAGTACCACGAGGAGCAGAAGCAATACATAGACAAGTTAAATGCCTTACGG AGACATAAGGAAAAACTGGAAGAAAAAATCATGGATCAGTACAAGTTCTATGATCCTGCT CCAAAGAAGAAAAACCACTGGATTGGAGCCAAAGCCTTAGTCAAACTCATCAAACCAAAG AAGGAGGGTTCCAGAGACCGAGTGAAGTCAACCACAGACAGCCCGCCCCCGCAGCTGGAG TCCCCGGACCCCACCTCGACACCCGCTTCTCAGCCTCTCAGATCTCAGCCCGAGAATCCC GAGTCCACCCCGTCGGGCTCCAGCTGTGCAGATGAGCATGATGCCCACAATGGGCCCCTG GGAAAAGCTCAGCGCAAAAAGAGTCCCTTTTTGAGAAGCAAAAGCAAAGACAAAGACAAG TTTCCAGCGGCCCACCCGGCTCTCTTTAAACGCCTGCGGTTTTGGTCTTCCCCTGACATC CCATCCTAACAAAATCGAGCCTCTCCCTTTTCCAGAAATGGGAGACTTCTAATCCTTTCC CTTTAGCATGTGTCTTCATCGTGTACCCTCCTCCATCTTTGAAACTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 71-709, - strand, RNAz p=0.71675 | |
| 389-508, - strand, RNAz p=0.590751 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 71-709, - strand, RNAz p=0.71675 | |
| 389-508, - strand, RNAz p=0.590751 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 71-218, gnl|bosTau2|chr21 (35265531-35265384) | |
| 71-218, gnl|canFam2|chr8 (65186009-65186201) | |
| 71-218, gnl|danRer3|chr17 (43545932-43546089) | |
| 71-218, gnl|dasNov1|scaffold_50530 (11541-11736) | |
| 71-218, gnl|fr1|chrUn (46967399-46967233) | |
| 71-218, gnl|galGal2|chr5 (41075630-41075815) | |
| 71-218, gnl|hg17|chr14 (90830262-90830457) | |
| 71-218, gnl|Hg17|chr14 (90830417-90830270) | |
| 71-218, gnl|loxAfr1|scaffold_9193 (2611-2797) | |
| 71-218, gnl|mm7|chr12 (98427112-98427307) | |
| 71-218, gnl|Mm7|chr12 (98427267-98427120) | |
| 71-218, gnl|monDom2|scaffold_8 (33745819-33745649) | |
| 71-218, gnl|oryCun1|scaffold_149174 (12072-12267) | |
| 71-218, gnl|panTro1|chr15 (91176860-91177055) | |
| 71-218, gnl|rheMac2|chr7 (154509975-154510170) | |
| 71-218, gnl|rn3|chr6 (125202148-125202343) | |
| 71-218, gnl|tetNig1|chr17 (10688782-10688944) | |
| 71-218, gnl|xenTro1|scaffold_22 (2565905-2566082) | |
| 309-547, gnl|bosTau2|chr21 (35261331-35261093) | |
| 309-547, gnl|canFam2|chr8 (65181870-65182030) | |
| 309-547, gnl|dasNov1|scaffold_50530 (8630-8793) | |
| 309-547, gnl|echTel1|scaffold_274984 (5783-5629) | |
| 309-547, gnl|galGal2|chr5 (41073182-41073348) | |
| 309-547, gnl|hg17|chr14 (90825200-90825363) | |
| 309-547, gnl|Hg17|chr14 (90825440-90825202) | |
| 309-547, gnl|mm7|chr12 (98424177-98424340) | |
| 309-547, gnl|Mm7|chr12 (98424417-98424179) | |
| 309-547, gnl|monDom2|scaffold_8 (33756053-33755887) | |
| 309-547, gnl|oryCun1|scaffold_149174 (8849-9006) | |
| 309-547, gnl|panTro1|chr15 (91171759-91171922) | |
| 309-547, gnl|rheMac2|chr7 (154505130-154505293) | |
| 309-547, gnl|rn3|chr6 (125198357-125198517) | |
| 309-547, gnl|xenTro1|scaffold_22 (2564123-2564280) | |
| 550-768, gnl|bosTau2|chr21 (35258387-35258170) | |
| 550-768, gnl|Hg17|chr14 (90821928-90821711) | |
| 550-768, gnl|Mm7|chr12 (98420997-98420781) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-218, gnl|bosTau2|chr21 (35265531-35265384) | |
| 71-218, gnl|canFam2|chr8 (65186009-65186201) | |
| 71-218, gnl|danRer3|chr17 (43545932-43546089) | |
| 71-218, gnl|dasNov1|scaffold_50530 (11541-11736) | |
| 71-218, gnl|fr1|chrUn (46967399-46967233) | |
| 71-218, gnl|galGal2|chr5 (41075630-41075815) | |
| 71-218, gnl|hg17|chr14 (90830262-90830457) | |
| 71-218, gnl|Hg17|chr14 (90830417-90830270) | |
| 71-218, gnl|loxAfr1|scaffold_9193 (2611-2797) | |
| 71-218, gnl|mm7|chr12 (98427112-98427307) | |
| 71-218, gnl|Mm7|chr12 (98427267-98427120) | |
| 71-218, gnl|monDom2|scaffold_8 (33745819-33745649) | |
| 71-218, gnl|oryCun1|scaffold_149174 (12072-12267) | |
| 71-218, gnl|panTro1|chr15 (91176860-91177055) | |
| 71-218, gnl|rheMac2|chr7 (154509975-154510170) | |
| 71-218, gnl|rn3|chr6 (125202148-125202343) | |
| 71-218, gnl|tetNig1|chr17 (10688782-10688944) | |
| 71-218, gnl|xenTro1|scaffold_22 (2565905-2566082) | |
| 309-547, gnl|bosTau2|chr21 (35261331-35261093) | |
| 309-547, gnl|canFam2|chr8 (65181870-65182030) | |
| 309-547, gnl|dasNov1|scaffold_50530 (8630-8793) | |
| 309-547, gnl|echTel1|scaffold_274984 (5783-5629) | |
| 309-547, gnl|galGal2|chr5 (41073182-41073348) | |
| 309-547, gnl|hg17|chr14 (90825200-90825363) | |
| 309-547, gnl|Hg17|chr14 (90825440-90825202) | |
| 309-547, gnl|mm7|chr12 (98424177-98424340) | |
| 309-547, gnl|Mm7|chr12 (98424417-98424179) | |
| 309-547, gnl|monDom2|scaffold_8 (33756053-33755887) | |
| 309-547, gnl|oryCun1|scaffold_149174 (8849-9006) | |
| 309-547, gnl|panTro1|chr15 (91171759-91171922) | |
| 309-547, gnl|rheMac2|chr7 (154505130-154505293) | |
| 309-547, gnl|rn3|chr6 (125198357-125198517) | |
| 309-547, gnl|xenTro1|scaffold_22 (2564123-2564280) | |
| 550-768, gnl|bosTau2|chr21 (35258387-35258170) | |
| 550-768, gnl|Hg17|chr14 (90821928-90821711) | |
| 550-768, gnl|Mm7|chr12 (98420997-98420781) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.330469) | |
| duo (0.172801) |