Non-Coding RNA Search

Ss1.1-rcki019_b12.5

Sequence:


               
               TTGCCCACTCGCCGGCACTGCCCCCTCTCAGGATGAAGGACCCAGACCCTTCCCAGGTCT
ATCGGCCTGATATGGACCCAGAGGCGGCCAAAGACAAGGGCAGCTTCCGAAACTACACGT
CTGGCCCGCTGCTGGACCGGGTCTTCCGCACCTACAAGCTGATGCACACGTGGCAGACCG
TGGACTTCGTCAGGAAGAAGCACGCCCAGTTCGGGGGCTTCTCCTACAAGAGAATGACTG
TCTTGGAGGCCGTGGACATGCTAGACGGGCTGGTGGACGAGTCCGACCCCGACGTGGACT
TCCCCAACTCCTTCCACGCCTTCCAGACGGCCGAGGGCATCCGGAAGGCCCACCCTGACA
AAGACTGGTTCCACCTCGTCGGGCTCCTGCATGACCTGGGGAAGGTCCTGGTTCTGGCAG
GGGAACCCCAGTGGGCCGTCGTTGGAGACACCTTCCCTGTGGGCTGCCGTCCGCAGGCCT
CTGTGGTTTTCTGCGACTCTACCTTCCAGGATAACCCTGACCTTCAGGACCCTGTCTACA
GCACAGAGCTTGGCATGTACCAGCCCCACTGTGGGCTCGAGAATGTCCTGATGTCCTGGG
GCCACGATGAGTACATGTACCAGATGATGAAGTTCAACAAATTCTCCCTCCCAGGAGAGG
CCTTCTACATCATCCGCTTCCACTCCTTCTACCCGTGGCACACGGGCGGCGACTACCGGC
AACTGTGCAACGAGCAGGACCTGGCCATGCTGCCCTGGGTGCAGGAGTTCAACAAGTTCG
ATCTCTACACCAAGGGCTCCGACCTGCCGGACGTGGACGAGCTGCGGCCCTACTACCAGG
GGCTCATTGACAAGTACTGCCCCGGTGTCCTGTGCTGGTGACCGACCTGTCCACCTGCCC
AAGCCTGGCTGGGTACCCCGGGTGACAGTCGCTGTCAGGCACAGGGATGACCCACCGCGG
CCTTTCCAGGGGTCCCCACAGGCCCACCTGCACTCCCTGCCCGGTTGGCCCCCATCCCCA
GGGGCAATAAAAGCCTTGAAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCCCACTCGCCGGCACTGCCCCCTCTCAGGATGAAGGACCCAGACCCTTCCCAGGTCT
ATCGGCCTGATATGGACCCAGAGGCGGCCAAAGACAAGGGCAGCTTCCGAAACTACACGT
CTGGCCCGCTGCTGGACCGGGTCTTCCGCACCTACAAGCTGATGCACACGTGGCAGACCG
TGGACTTCGTCAGGAAGAAGCACGCCCAGTTCGGGGGCTTCTCCTACAAGAGAATGACTG
TCTTGGAGGCCGTGGACATGCTAGACGGGCTGGTGGACGAGTCCGACCCCGACGTGGACT
TCCCCAACTCCTTCCACGCCTTCCAGACGGCCGAGGGCATCCGGAAGGCCCACCCTGACA
AAGACTGGTTCCACCTCGTCGGGCTCCTGCATGACCTGGGGAAGGTCCTGGTTCTGGCAG
GGGAACCCCAGTGGGCCGTCGTTGGAGACACCTTCCCTGTGGGCTGCCGTCCGCAGGCCT
CTGTGGTTTTCTGCGACTCTACCTTCCAGGATAACCCTGACCTTCAGGACCCTGTCTACA
GCACAGAGCTTGGCATGTACCAGCCCCACTGTGGGCTCGAGAATGTCCTGATGTCCTGGG
GCCACGATGAGTACATGTACCAGATGATGAAGTTCAACAAATTCTCCCTCCCAGGAGAGG
CCTTCTACATCATCCGCTTCCACTCCTTCTACCCGTGGCACACGGGCGGCGACTACCGGC
AACTGTGCAACGAGCAGGACCTGGCCATGCTGCCCTGGGTGCAGGAGTTCAACAAGTTCG
ATCTCTACACCAAGGGCTCCGACCTGCCGGACGTGGACGAGCTGCGGCCCTACTACCAGG
GGCTCATTGACAAGTACTGCCCCGGTGTCCTGTGCTGGTGACCGACCTGTCCACCTGCCC
AAGCCTGGCTGGGTACCCCGGGTGACAGTCGCTGTCAGGCACAGGGATGACCCACCGCGG
CCTTTCCAGGGGTCCCCACAGGCCCACCTGCACTCCCTGCCCGGTTGGCCCCCATCCCCA
GGGGCAATAAAAGCCTTGAAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523014|ref|NP_999267.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523014|ref|NP_999267.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-405, - strand, RNAz p=0.99365

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-405, - strand, RNAz p=0.99365

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               199-405, gnl|bosTau2|chr5 (75796120-75795918)
               

               
               199-405, gnl|Hg17|chr22 (49216457-49216694)
               

               
               199-405, gnl|Mm7|chr15 (89418364-89418579)
               


               
               426-541, gnl|bosTau2|chr5 (75795612-75795497)
               

               
               426-541, gnl|Hg17|chr22 (49217603-49217722)
               

               
               426-541, gnl|Mm7|chr15 (89418887-89419002)
               


               
               770-1044, gnl|bosTau2|chr5 (75794628-75794362)
               

               
               770-1044, gnl|Hg17|chr22 (49218318-49218610)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               199-405, gnl|bosTau2|chr5 (75796120-75795918)
               

               
               199-405, gnl|Hg17|chr22 (49216457-49216694)
               

               
               199-405, gnl|Mm7|chr15 (89418364-89418579)
               


               
               426-541, gnl|bosTau2|chr5 (75795612-75795497)
               

               
               426-541, gnl|Hg17|chr22 (49217603-49217722)
               

               
               426-541, gnl|Mm7|chr15 (89418887-89419002)
               


               
               770-1044, gnl|bosTau2|chr5 (75794628-75794362)
               

               
               770-1044, gnl|Hg17|chr22 (49218318-49218610)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cki (3.30469)
               

               
               cli (0.611247)
               

               
               sme (0.305437)
               

               
               che (0.136314)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (3.30469)
               

               
               cli (0.611247)
               

               
               sme (0.305437)
               

               
               che (0.136314)

	199-405, gnl\|bosTau2\|chr5 (75796120-75795918)
	199-405, gnl\|Hg17\|chr22 (49216457-49216694)
	199-405, gnl\|Mm7\|chr15 (89418364-89418579)

	426-541, gnl\|bosTau2\|chr5 (75795612-75795497)
	426-541, gnl\|Hg17\|chr22 (49217603-49217722)
	426-541, gnl\|Mm7\|chr15 (89418887-89419002)

	770-1044, gnl\|bosTau2\|chr5 (75794628-75794362)
	770-1044, gnl\|Hg17\|chr22 (49218318-49218610)