Non-Coding RNA Search

Ss1.1-rcki01_a8.5

Sequence:


               
               TTCATATCTGAATGGAAGAGATCATTATTGGCCCTTTTTTCCTTTTGCTGCCAGTGGAAT
GTTGACAGTGGCAAAGAGGTGAGATCCTGGGCAATAGTGGCTTCTTGGTCTGTTCAGCCC
AAAGACCTGCCACATGAAGGCCCACCAGTTGGCCTTTGGACATGCTGGTGGCCTCCTGCC
TCAAGCTTTAACCTGTGCCTCTTCCTAACAACAAGGAGTCATGCGTTAGGTGTTGACTTA
CCACACCTTTAAAGGAAAAATACATAAAGGCCCAAATTCAACTTGTTTCTTCCTCTAAGC
AGTGTGAGCCTAGAGGCTGCAGCCCAGGATCCTTGTCCGAAGGCTGCCCCAGGACCCTGG
AGGGAGCCACAGCTGTCAGCAGCTTTCTCTGCCCTCCGGACTGCAATTCACTGGCCTTTT
TGCAGCCAGACCAACATAGATGGCTCTGGGAACTTGCCATCAGCCAGAACAGCTACCTTG
TGGGGTGAAGGGCTGGCCTTTAGAAGTTTTACACATTTCCAACTAGGAGTGGAGAGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATATCTGAATGGAAGAGATCATTATTGGCCCTTTTTTCCTTTTGCTGCCAGTGGAAT
GTTGACAGTGGCAAAGAGGTGAGATCCTGGGCAATAGTGGCTTCTTGGTCTGTTCAGCCC
AAAGACCTGCCACATGAAGGCCCACCAGTTGGCCTTTGGACATGCTGGTGGCCTCCTGCC
TCAAGCTTTAACCTGTGCCTCTTCCTAACAACAAGGAGTCATGCGTTAGGTGTTGACTTA
CCACACCTTTAAAGGAAAAATACATAAAGGCCCAAATTCAACTTGTTTCTTCCTCTAAGC
AGTGTGAGCCTAGAGGCTGCAGCCCAGGATCCTTGTCCGAAGGCTGCCCCAGGACCCTGG
AGGGAGCCACAGCTGTCAGCAGCTTTCTCTGCCCTCCGGACTGCAATTCACTGGCCTTTT
TGCAGCCAGACCAACATAGATGGCTCTGGGAACTTGCCATCAGCCAGAACAGCTACCTTG
TGGGGTGAAGGGCTGGCCTTTAGAAGTTTTACACATTTCCAACTAGGAGTGGAGAGCTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               7-472, - strand, RNAz p=0.998255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-472, - strand, RNAz p=0.998255

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-538, gnl|bosTau2|chr22 (42294855-42295387)
               

               
               7-538, gnl|Hg17|chr3 (52846660-52846135)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-538, gnl|bosTau2|chr22 (42294855-42295387)
               

               
               7-538, gnl|Hg17|chr3 (52846660-52846135)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cst (0.140036)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               cst (0.140036)

	7-538, gnl\|bosTau2\|chr22 (42294855-42295387)
	7-538, gnl\|Hg17\|chr3 (52846660-52846135)