Non-Coding RNA Search

Ss1.1-rcki01_p8.5

Sequence:


               
               CCCGCAGGAGCCGACCATGCGAGCCCATTAAGAGAACAGTTCAGTCCCACCTGCCTCCTG
GAGCCAGCCAACAATCTCAGCTTCAGCACTCCATGCTTGATTATGTACAGCCATTGCAAT
CCTGAGTGGCAGGATTTGCAAAGACAGCTGTTGGGCTCCACAAACATTTGGAGGAGGAGG
GGGGAAATGTGAGGTGAGAAATGGGAGAAGATAAAAGGAACCGTCAATAGGTCAAAACGA
CGAGCTATTAGCAGACCCAAGACCTCAGTCAAGGCTGGATGTCATTGCTAAAAAAAGCTT
CCTAAGAATTTTGCATGGGTTATTCATATCACATATGAAGAATATTACTCATTTTAAGGA
AACAAAATTAAATAAAAACGTTGAAGAGGGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCAGGAGCCGACCATGCGAGCCCATTAAGAGAACAGTTCAGTCCCACCTGCCTCCTG
GAGCCAGCCAACAATCTCAGCTTCAGCACTCCATGCTTGATTATGTACAGCCATTGCAAT
CCTGAGTGGCAGGATTTGCAAAGACAGCTGTTGGGCTCCACAAACATTTGGAGGAGGAGG
GGGGAAATGTGAGGTGAGAAATGGGAGAAGATAAAAGGAACCGTCAATAGGTCAAAACGA
CGAGCTATTAGCAGACCCAAGACCTCAGTCAAGGCTGGATGTCATTGCTAAAAAAAGCTT
CCTAAGAATTTTGCATGGGTTATTCATATCACATATGAAGAATATTACTCATTTTAAGGA
AACAAAATTAAATAAAAACGTTGAAGAGGGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               99-195, + strand, RNAz p=0.817766

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-195, + strand, RNAz p=0.817766

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-195, gnl|bosTau2|chr5 (14456680-14456489)
               

               
               1-195, gnl|canFam2|chr15 (35898542-35898858)
               

               
               1-195, gnl|dasNov1|scaffold_23017 (17975-17654)
               

               
               1-195, gnl|echTel1|scaffold_323024 (163731-163406)
               

               
               1-195, gnl|hg17|chr12 (91362593-91362916)
               

               
               1-195, gnl|Hg17|chr12 (91362596-91362786)
               

               
               1-195, gnl|loxAfr1|scaffold_42623 (26180-25853)
               

               
               1-195, gnl|mm7|chr10 (95871957-95871625)
               

               
               1-195, gnl|Mm7|chr10 (95871952-95871756)
               

               
               1-195, gnl|monDom2|scaffold_34 (23984371-23984057)
               

               
               1-195, gnl|oryCun1|scaffold_189029 (19529-19207)
               

               
               1-195, gnl|panTro1|chr10 (93537619-93537942)
               

               
               1-195, gnl|rheMac2|chr11 (93671358-93671681)
               

               
               1-195, gnl|rn3|chr7 (33716771-33716435)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-195, gnl|bosTau2|chr5 (14456680-14456489)
               

               
               1-195, gnl|canFam2|chr15 (35898542-35898858)
               

               
               1-195, gnl|dasNov1|scaffold_23017 (17975-17654)
               

               
               1-195, gnl|echTel1|scaffold_323024 (163731-163406)
               

               
               1-195, gnl|hg17|chr12 (91362593-91362916)
               

               
               1-195, gnl|Hg17|chr12 (91362596-91362786)
               

               
               1-195, gnl|loxAfr1|scaffold_42623 (26180-25853)
               

               
               1-195, gnl|mm7|chr10 (95871957-95871625)
               

               
               1-195, gnl|Mm7|chr10 (95871952-95871756)
               

               
               1-195, gnl|monDom2|scaffold_34 (23984371-23984057)
               

               
               1-195, gnl|oryCun1|scaffold_189029 (19529-19207)
               

               
               1-195, gnl|panTro1|chr10 (93537619-93537942)
               

               
               1-195, gnl|rheMac2|chr11 (93671358-93671681)
               

               
               1-195, gnl|rn3|chr7 (33716771-33716435)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cki (0.165235)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               lnt (0.142308)

	1-195, gnl\|bosTau2\|chr5 (14456680-14456489)
	1-195, gnl\|canFam2\|chr15 (35898542-35898858)
	1-195, gnl\|dasNov1\|scaffold_23017 (17975-17654)
	1-195, gnl\|echTel1\|scaffold_323024 (163731-163406)
	1-195, gnl\|hg17\|chr12 (91362593-91362916)
	1-195, gnl\|Hg17\|chr12 (91362596-91362786)
	1-195, gnl\|loxAfr1\|scaffold_42623 (26180-25853)
	1-195, gnl\|mm7\|chr10 (95871957-95871625)
	1-195, gnl\|Mm7\|chr10 (95871952-95871756)
	1-195, gnl\|monDom2\|scaffold_34 (23984371-23984057)
	1-195, gnl\|oryCun1\|scaffold_189029 (19529-19207)
	1-195, gnl\|panTro1\|chr10 (93537619-93537942)
	1-195, gnl\|rheMac2\|chr11 (93671358-93671681)
	1-195, gnl\|rn3\|chr7 (33716771-33716435)