Non-Coding RNA Search

Ss1.1-rcki020_k19.5

Sequence:


               
               CCTCCCGGAAGTGGGCTCTGGATCGGGCAGTGAAAGTGGTGTCCAGTTACCCCCGGGACC
AGATCTGGGAAGTCGGAGCTGAACTGTTTCTTTACCTTTCTCCCATCCTTTCTGAATCTT
CTAGGTCCGCCTAGTGAGGAAACGTCTCCGCCGTCATGGGGGGCGGAGACCTGAATTTGA
AGAAGAGCTGGCACCCGCAGACTCTCCGCAATGTGGAGAAAGTGTGGAAGGCTGAGCAGA
AGCATGAGGCCGAGCGGAAGAAGATTGAGGAGCTTCAGCGGGAGCTGCGGGAGGAGAGGG
CTCGGGAGGAGATGCAGCGCTATGCGGAGGATGTCGGGGCTGTCAAGAAAAAGGAAGAAA
AATTGGACTGGATGTACCAGGGCCCCGGTGGGATGGTGAACCGTGATGAATACTTACTGG
GGCGCCCCATTGACAAATACGTTTTTGAGAAGATGGAGGAGAAGGAGGCAGGCTGTTCCT
CTGAGACAGGACTCCTCCCAGGCTCTATCTTTGCCCCATCGGGTGCCAATTCCCTTCTTG
ACATGGCCAGCAAAATCCGGGAGGACCCACTCTTCATCATCAGGAAGAAAGAGGAGGAGA
AAAAAAGAGAGGTGTTGAATAATCCTGTGAAAATGAAGAAAATTAAAGAATTGTTGCAAA
TGAGTCTAGTAAAAAAGGAGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCCGGAAGTGGGCTCTGGATCGGGCAGTGAAAGTGGTGTCCAGTTACCCCCGGGACC
AGATCTGGGAAGTCGGAGCTGAACTGTTTCTTTACCTTTCTCCCATCCTTTCTGAATCTT
CTAGGTCCGCCTAGTGAGGAAACGTCTCCGCCGTCATGGGGGGCGGAGACCTGAATTTGA
AGAAGAGCTGGCACCCGCAGACTCTCCGCAATGTGGAGAAAGTGTGGAAGGCTGAGCAGA
AGCATGAGGCCGAGCGGAAGAAGATTGAGGAGCTTCAGCGGGAGCTGCGGGAGGAGAGGG
CTCGGGAGGAGATGCAGCGCTATGCGGAGGATGTCGGGGCTGTCAAGAAAAAGGAAGAAA
AATTGGACTGGATGTACCAGGGCCCCGGTGGGATGGTGAACCGTGATGAATACTTACTGG
GGCGCCCCATTGACAAATACGTTTTTGAGAAGATGGAGGAGAAGGAGGCAGGCTGTTCCT
CTGAGACAGGACTCCTCCCAGGCTCTATCTTTGCCCCATCGGGTGCCAATTCCCTTCTTG
ACATGGCCAGCAAAATCCGGGAGGACCCACTCTTCATCATCAGGAAGAAAGAGGAGGAGA
AAAAAAGAGAGGTGTTGAATAATCCTGTGAAAATGAAGAAAATTAAAGAATTGTTGCAAA
TGAGTCTAGTAAAAAAGGAGAAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886395|ref|XP_589691.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886395|ref|XP_589691.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               347-506, + strand, RNAz p=0.922497

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-506, + strand, RNAz p=0.922497

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC008833, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC008833, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-173, gnl|bosTau2|chr19 (35860914-35860739)
               

               
               1-173, gnl|Hg17|chr17 (34235119-34234945)
               

               
               1-173, gnl|Mm7|chr11 (97875639-97875464)
               


               
               347-584, gnl|bosTau2|chr19 (35852486-35852249)
               

               
               347-584, gnl|canFam2|chr9 (26760333-26760066)
               

               
               347-584, gnl|danRer3|chr2 (176546-176306)
               

               
               347-584, gnl|fr1|chrUn (128655464-128655722)
               

               
               347-584, gnl|galGal2|chr27 (2562062-2562310)
               

               
               347-584, gnl|hg17|chr17 (34224638-34224905)
               

               
               347-584, gnl|Hg17|chr17 (34224876-34224639)
               

               
               347-584, gnl|loxAfr1|scaffold_1668 (66175-65892)
               

               
               347-584, gnl|mm7|chr11 (97866610-97866879)
               

               
               347-584, gnl|Mm7|chr11 (97866848-97866611)
               

               
               347-584, gnl|monDom2|scaffold_18 (47738068-47738335)
               

               
               347-584, gnl|oryCun1|scaffold_175847 (140246-139977)
               

               
               347-584, gnl|panTro1|chr19 (37443717-37443984)
               

               
               347-584, gnl|rheMac2|chr16 (48848230-48848497)
               

               
               347-584, gnl|rn3|chr10 (86519199-86519468)
               

               
               347-584, gnl|tetNig1|chr18 (1020435-1020682)
               

               
               347-584, gnl|xenTro1|scaffold_334 (639711-639971)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-173, gnl|bosTau2|chr19 (35860914-35860739)
               

               
               1-173, gnl|Hg17|chr17 (34235119-34234945)
               

               
               1-173, gnl|Mm7|chr11 (97875639-97875464)
               


               
               347-584, gnl|bosTau2|chr19 (35852486-35852249)
               

               
               347-584, gnl|canFam2|chr9 (26760333-26760066)
               

               
               347-584, gnl|danRer3|chr2 (176546-176306)
               

               
               347-584, gnl|fr1|chrUn (128655464-128655722)
               

               
               347-584, gnl|galGal2|chr27 (2562062-2562310)
               

               
               347-584, gnl|hg17|chr17 (34224638-34224905)
               

               
               347-584, gnl|Hg17|chr17 (34224876-34224639)
               

               
               347-584, gnl|loxAfr1|scaffold_1668 (66175-65892)
               

               
               347-584, gnl|mm7|chr11 (97866610-97866879)
               

               
               347-584, gnl|Mm7|chr11 (97866848-97866611)
               

               
               347-584, gnl|monDom2|scaffold_18 (47738068-47738335)
               

               
               347-584, gnl|oryCun1|scaffold_175847 (140246-139977)
               

               
               347-584, gnl|panTro1|chr19 (37443717-37443984)
               

               
               347-584, gnl|rheMac2|chr16 (48848230-48848497)
               

               
               347-584, gnl|rn3|chr10 (86519199-86519468)
               

               
               347-584, gnl|tetNig1|chr18 (1020435-1020682)
               

               
               347-584, gnl|xenTro1|scaffold_334 (639711-639971)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               cki (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cki (0.165235)

	1-173, gnl\|bosTau2\|chr19 (35860914-35860739)
	1-173, gnl\|Hg17\|chr17 (34235119-34234945)
	1-173, gnl\|Mm7\|chr11 (97875639-97875464)

	347-584, gnl\|bosTau2\|chr19 (35852486-35852249)
	347-584, gnl\|canFam2\|chr9 (26760333-26760066)
	347-584, gnl\|danRer3\|chr2 (176546-176306)
	347-584, gnl\|fr1\|chrUn (128655464-128655722)
	347-584, gnl\|galGal2\|chr27 (2562062-2562310)
	347-584, gnl\|hg17\|chr17 (34224638-34224905)
	347-584, gnl\|Hg17\|chr17 (34224876-34224639)
	347-584, gnl\|loxAfr1\|scaffold_1668 (66175-65892)
	347-584, gnl\|mm7\|chr11 (97866610-97866879)
	347-584, gnl\|Mm7\|chr11 (97866848-97866611)
	347-584, gnl\|monDom2\|scaffold_18 (47738068-47738335)
	347-584, gnl\|oryCun1\|scaffold_175847 (140246-139977)
	347-584, gnl\|panTro1\|chr19 (37443717-37443984)
	347-584, gnl\|rheMac2\|chr16 (48848230-48848497)
	347-584, gnl\|rn3\|chr10 (86519199-86519468)
	347-584, gnl\|tetNig1\|chr18 (1020435-1020682)
	347-584, gnl\|xenTro1\|scaffold_334 (639711-639971)