Non-Coding RNA Search

Ss1.1-rcki04_n21.5

Sequence:


               
               GCGGCCGCGGGCGCCAGCGCGATGCCGCGCCCGCCGCGGTTCAGGGAGAGGGAGAAGCGC
GCGTCGAGGTCCCGGCCAGCGCCCGAGGGGCCGAGCCTCGCCCGAGCACTCGGCGGCCCG
CGCCGGGGCGCCCGGCGTCTGCGAGGGTGGTTTTGTGGTTTCCGCGTCTCGCTTCCCCTC
TGCTCTCCGTGTTCCTGCCCCACCCTGGGCTCCTTGGCGACGCCCGGTCGACCCAGACGC
CGCCGTGCGGCCACACCGAAGCCACCGCACCTGCCAGCTGCTCCGTTGGACCGGCCCAGC
CGCAGACACCGTCCCCTCCGCCGCCCGAGAGGTCGGGCGGCCCGGGCCGCCCCTGAGCGC
GGAGAAAATGGGGCTTTGCTTTTTAAAGACGTCCTCCCTCTGGTCTGTGTGTCAGACTCC
TAGCGTTTCTTTTCAAGGAAGCCGTCTGGTGGCAGGAGGCCCGCGAGGACCTGCCCTTGC
CCCGCCAGGGCCGCGCGGCGAGGCTGGCACCTTCTCTGATTCCCAAGCCACATGGTATGA
TAATGACTAAACTGATTTATTTTCTACCATTATTGAACATTAGGACAAACAAAAAATAAA
AAACACAAAACACAGACAACGGTGCTGATTCTGGTGTGGTTTCTACTCACCATGTGAAAA
TAAACTATCAACTGTATAAAGAGAACAAAGTGATTTTAGAATAAAATGCAGGAAAACCTT
TTTTAAAGACGTTAGTCTTGTAGTGTGAATAAACTTGCCGTCGCCTTTGGTGTGGTGGCC
TGCCCGGTCCTACCCTCTGGCCTATACTTTTTTAAAGACTGTAACTAGTGCAGTAACAGT
GGGGTGCGACTCTTCTAGAACATTCATAATGCAGTCACGTTTATTTTTTCTGTTAAAATG
TTTTTTGACAGTTCTAAGAGCAGTCTTTTGGCTCAGACCATTTCTTGTTCTGTTTTCAAT
GAAATCAATAAAAAAAAGAAGTACTTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCGGGCGCCAGCGCGATGCCGCGCCCGCCGCGGTTCAGGGAGAGGGAGAAGCGC
GCGTCGAGGTCCCGGCCAGCGCCCGAGGGGCCGAGCCTCGCCCGAGCACTCGGCGGCCCG
CGCCGGGGCGCCCGGCGTCTGCGAGGGTGGTTTTGTGGTTTCCGCGTCTCGCTTCCCCTC
TGCTCTCCGTGTTCCTGCCCCACCCTGGGCTCCTTGGCGACGCCCGGTCGACCCAGACGC
CGCCGTGCGGCCACACCGAAGCCACCGCACCTGCCAGCTGCTCCGTTGGACCGGCCCAGC
CGCAGACACCGTCCCCTCCGCCGCCCGAGAGGTCGGGCGGCCCGGGCCGCCCCTGAGCGC
GGAGAAAATGGGGCTTTGCTTTTTAAAGACGTCCTCCCTCTGGTCTGTGTGTCAGACTCC
TAGCGTTTCTTTTCAAGGAAGCCGTCTGGTGGCAGGAGGCCCGCGAGGACCTGCCCTTGC
CCCGCCAGGGCCGCGCGGCGAGGCTGGCACCTTCTCTGATTCCCAAGCCACATGGTATGA
TAATGACTAAACTGATTTATTTTCTACCATTATTGAACATTAGGACAAACAAAAAATAAA
AAACACAAAACACAGACAACGGTGCTGATTCTGGTGTGGTTTCTACTCACCATGTGAAAA
TAAACTATCAACTGTATAAAGAGAACAAAGTGATTTTAGAATAAAATGCAGGAAAACCTT
TTTTAAAGACGTTAGTCTTGTAGTGTGAATAAACTTGCCGTCGCCTTTGGTGTGGTGGCC
TGCCCGGTCCTACCCTCTGGCCTATACTTTTTTAAAGACTGTAACTAGTGCAGTAACAGT
GGGGTGCGACTCTTCTAGAACATTCATAATGCAGTCACGTTTATTTTTTCTGTTAAAATG
TTTTTTGACAGTTCTAAGAGCAGTCTTTTGGCTCAGACCATTTCTTGTTCTGTTTTCAAT
GAAATCAATAAAAAAAAGAAGTACTTTAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               71-461, gnl|bosTau2|chr3 (74375933-74376318)
               

               
               71-461, gnl|Hg17|chr9 (138005423-138005910)
               

               
               71-461, gnl|Mm7|chr2 (24799118-24798671)
               


               
               507-990, gnl|bosTau2|chr3 (74376335-74376830)
               

               
               507-990, gnl|Hg17|chr9 (138005921-138006416)
               

               
               507-990, gnl|Mm7|chr2 (24798647-24798084)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-461, gnl|bosTau2|chr3 (74375933-74376318)
               

               
               71-461, gnl|Hg17|chr9 (138005423-138005910)
               

               
               71-461, gnl|Mm7|chr2 (24799118-24798671)
               


               
               507-990, gnl|bosTau2|chr3 (74376335-74376830)
               

               
               507-990, gnl|Hg17|chr9 (138005921-138006416)
               

               
               507-990, gnl|Mm7|chr2 (24798647-24798084)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               cmu (0.55918)
               

               
               sto (0.539471)
               

               
               thg (0.507164)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               csk (0.281492)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               pgl (0.118483)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               sto (0.539471)
               

               
               thg (0.507164)
               

               
               sin (0.349895)
               

               
               cut (0.339847)
               

               
               csk (0.281492)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               pgl (0.118483)

	71-461, gnl\|bosTau2\|chr3 (74375933-74376318)
	71-461, gnl\|Hg17\|chr9 (138005423-138005910)
	71-461, gnl\|Mm7\|chr2 (24799118-24798671)

	507-990, gnl\|bosTau2\|chr3 (74376335-74376830)
	507-990, gnl\|Hg17\|chr9 (138005921-138006416)
	507-990, gnl\|Mm7\|chr2 (24798647-24798084)

	cmu (0.55918)
	sto (0.539471)
	thg (0.507164)
	sin (0.349895)
	cut (0.339847)
	csk (0.281492)
	pla (0.267344)
	cbe (0.239234)
	hea (0.204499)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	cje (0.165235)
	isp (0.150376)
	spl (0.143184)
	pty (0.142714)
	pgl (0.118483)