Non-Coding RNA Search

Ss1.1-rcki07_c2.5

Sequence:


               
               CCATGCTGTAGTTGCTCTGAGAAATAACCTTGAGCTCAATGGAGTAGCAGATCGGTGCCA
AATACACTTTGGGGATAACAGAAAACTGAGGCTCTCAAACATCGCAGACAGGGTGAACCT
GGGGCTGATTCCCAGCTCTGAAGAAGGCTGGCCTATTGCCTGCCGAGTGCTAAGACAGGA
TGCTGGAGGCATTTTGCATATTCACCAAAATGTGGAGTCTTTCCCGGGGAAGAAGCTGCA
GCCTACTGGAAGCAGTGAAACGGAAAAGGAGTATCGGCCTTCTCTTCAGCAAATTATCAC
CAACCAGTTGAAAAATGGAGCTGCTAGTGATTCTAGGAGAAAAATGCAATCAGCGGCCAT
CAAGCCAGAGTGGCAAAGGTGGGCGGAAGCTGCAGAAACTCACCTTGCCACACTTCTTTG
GCAGGTGCACGGGAAGCCATGGAAAACACAAATCCTGCACATCCAGCTAGTGAAATCCTA
TGCTCCCCACGTGGATCACATAGTCCTGGATCTGGAATGCCGCCCCTGTCCTCTGGTTGG
CTAGAGAAGTTGGATCCTGAGCCAGGAGGATCTACATGTGAGTGATCCTTAAAGCATCAG
CTCAGGCTGGGGTCTCACCCCTCCTGTCTCCTGGTAATCTGCTTTAATAGTTTGTGGCCC
AGAAGGCAGGCTCTAAACTAATACATGTCATTTCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGCTGTAGTTGCTCTGAGAAATAACCTTGAGCTCAATGGAGTAGCAGATCGGTGCCA
AATACACTTTGGGGATAACAGAAAACTGAGGCTCTCAAACATCGCAGACAGGGTGAACCT
GGGGCTGATTCCCAGCTCTGAAGAAGGCTGGCCTATTGCCTGCCGAGTGCTAAGACAGGA
TGCTGGAGGCATTTTGCATATTCACCAAAATGTGGAGTCTTTCCCGGGGAAGAAGCTGCA
GCCTACTGGAAGCAGTGAAACGGAAAAGGAGTATCGGCCTTCTCTTCAGCAAATTATCAC
CAACCAGTTGAAAAATGGAGCTGCTAGTGATTCTAGGAGAAAAATGCAATCAGCGGCCAT
CAAGCCAGAGTGGCAAAGGTGGGCGGAAGCTGCAGAAACTCACCTTGCCACACTTCTTTG
GCAGGTGCACGGGAAGCCATGGAAAACACAAATCCTGCACATCCAGCTAGTGAAATCCTA
TGCTCCCCACGTGGATCACATAGTCCTGGATCTGGAATGCCGCCCCTGTCCTCTGGTTGG
CTAGAGAAGTTGGATCCTGAGCCAGGAGGATCTACATGTGAGTGATCCTTAAAGCATCAG
CTCAGGCTGGGGTCTCACCCCTCCTGTCTCCTGGTAATCTGCTTTAATAGTTTGTGGCCC
AGAAGGCAGGCTCTAAACTAATACATGTCATTTCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-319, + strand, RNAz p=0.998991

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-319, + strand, RNAz p=0.998991

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               190-262, + strand, RNAmicro p=0.972581

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               190-262, + strand, RNAmicro p=0.972581

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               120-234, BY799249 Homo sapiens eye Homo sapiens cDNA clone HE4308.seq 5', 
(dbj|BY799249.2|), blast E-value=3e-40, identity=93.91% 
               

               
               120-319, AJ820747 KN206 Bos sp. cDNA clone C0006020b14, mRNA sequence 
(emb|AJ820747.1|), blast E-value=0, identity=89.5% 
               

               
               120-319, AM015170 KN-252-liver, Bos taurus Bos taurus cDNA clone C0005912c06 
(emb|AM015170.1|), blast E-value=0, identity=89% 
               

               
               120-319, 4084010 BARC 9BOV Bos taurus cDNA clone 9BOV27_F03 5', mRNA 
(gb|CK968703.1|), blast E-value=0, identity=89.5% 
               

               
               120-234, 17000424506645 GRN_ES Homo sapiens cDNA 5', mRNA sequence 
(gb|CN333794.1|), blast E-value=3e-40, identity=93.91% 
               

               
               120-319, LB01325.CR_N12 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV803609.1|), 
blast E-value=0, identity=89.5%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               120-234, BY799249 Homo sapiens eye Homo sapiens cDNA clone HE4308.seq 5', 
(dbj|BY799249.2|), blast E-value=3e-40, identity=93.91% 
               

               
               120-319, AJ820747 KN206 Bos sp. cDNA clone C0006020b14, mRNA sequence 
(emb|AJ820747.1|), blast E-value=0, identity=89.5% 
               

               
               120-319, AM015170 KN-252-liver, Bos taurus Bos taurus cDNA clone C0005912c06 
(emb|AM015170.1|), blast E-value=0, identity=89% 
               

               
               120-319, 4084010 BARC 9BOV Bos taurus cDNA clone 9BOV27_F03 5', mRNA 
(gb|CK968703.1|), blast E-value=0, identity=89.5% 
               

               
               120-234, 17000424506645 GRN_ES Homo sapiens cDNA 5', mRNA sequence 
(gb|CN333794.1|), blast E-value=3e-40, identity=93.91% 
               

               
               120-319, LB01325.CR_N12 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV803609.1|), 
blast E-value=0, identity=89.5%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-694, gnl|bosTau2|chr17 (6831749-6831065)
               

               
               1-694, gnl|Hg17|chr8 (125533153-125533851)
               

               
               1-694, gnl|Mm7|chr15 (58940300-58940971)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-694, gnl|bosTau2|chr17 (6831749-6831065)
               

               
               1-694, gnl|Hg17|chr8 (125533153-125533851)
               

               
               1-694, gnl|Mm7|chr15 (58940300-58940971)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	120-234, BY799249 Homo sapiens eye Homo sapiens cDNA clone HE4308.seq 5', (dbj\|BY799249.2\|), blast E-value=3e-40, identity=93.91%
	120-319, AJ820747 KN206 Bos sp. cDNA clone C0006020b14, mRNA sequence (emb\|AJ820747.1\|), blast E-value=0, identity=89.5%
	120-319, AM015170 KN-252-liver, Bos taurus Bos taurus cDNA clone C0005912c06 (emb\|AM015170.1\|), blast E-value=0, identity=89%
	120-319, 4084010 BARC 9BOV Bos taurus cDNA clone 9BOV27_F03 5', mRNA (gb\|CK968703.1\|), blast E-value=0, identity=89.5%
	120-234, 17000424506645 GRN_ES Homo sapiens cDNA 5', mRNA sequence (gb\|CN333794.1\|), blast E-value=3e-40, identity=93.91%
	120-319, LB01325.CR_N12 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb\|DV803609.1\|), blast E-value=0, identity=89.5%

	1-694, gnl\|bosTau2\|chr17 (6831749-6831065)
	1-694, gnl\|Hg17\|chr8 (125533153-125533851)
	1-694, gnl\|Mm7\|chr15 (58940300-58940971)