Non-Coding RNA Search

Ss1.1-rcki08_n13.5

Sequence:


               
               GCCACCCCACCCCCCACCCCATTCTCCATCGCCTTTATGTCAACGTCACAACCCCGCCCC
TCAATACGTCATAGTAGCGGAGCAGTCCGGGAGGACAACCCGCGAAAGTCCACGGCGCAC
TCTGAGCCGGAATGGGCGACTGGAAAGGCTACATTAGTGCAGTGCTGCGGGACCAGCGCA
TCGACGACGTGGCCATCGTGGGCCACTCGGACAATCGCTGCGTGTGGGCATCGCGGCCCG
GGGGCCTGCTGGCAGCCATCTCACCGCAGGAGGTGGGTGTGCTCATAGGGCCAGATCGGC
GCACCTTCCTGCAGGCGGGCCTGAGCGTAGCGGGCCGCCGATGCTGCGTCATCCGCGACC
ACCTGCTGGCTGAGGGCGACTGCGTGCTGGACGCACGCACCAAAGGGTTGGACGGGCGCG
CGGTCTGCGTGGGCCACACGCCGCGCGCGCTCCTAGTGCTTATGGGCCGGCGTGGCGTGC
ACGGAGGCATTCTCAACAAGACCATGCACGAGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACCCCACCCCCCACCCCATTCTCCATCGCCTTTATGTCAACGTCACAACCCCGCCCC
TCAATACGTCATAGTAGCGGAGCAGTCCGGGAGGACAACCCGCGAAAGTCCACGGCGCAC
TCTGAGCCGGAATGGGCGACTGGAAAGGCTACATTAGTGCAGTGCTGCGGGACCAGCGCA
TCGACGACGTGGCCATCGTGGGCCACTCGGACAATCGCTGCGTGTGGGCATCGCGGCCCG
GGGGCCTGCTGGCAGCCATCTCACCGCAGGAGGTGGGTGTGCTCATAGGGCCAGATCGGC
GCACCTTCCTGCAGGCGGGCCTGAGCGTAGCGGGCCGCCGATGCTGCGTCATCCGCGACC
ACCTGCTGGCTGAGGGCGACTGCGTGCTGGACGCACGCACCAAAGGGTTGGACGGGCGCG
CGGTCTGCGTGGGCCACACGCCGCGCGCGCTCCTAGTGCTTATGGGCCGGCGTGGCGTGC
ACGGAGGCATTCTCAACAAGACCATGCACGAGCTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879507|ref|XP_599641.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879507|ref|XP_599641.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               114-516, gnl|bosTau2|chr7 (21643259-21642857)
               

               
               114-516, gnl|canFam2|chr4 (39151366-39150933)
               

               
               114-516, gnl|dasNov1|scaffold_31231 (12728-13166)
               

               
               114-516, gnl|echTel1|scaffold_260388 (5162-4730)
               

               
               114-516, gnl|galGal2|chr3 (14967213-14966795)
               

               
               114-516, gnl|hg17|chr5 (176759770-176760205)
               

               
               114-516, gnl|Hg17|chr5 (176760200-176759799)
               

               
               114-516, gnl|loxAfr1|scaffold_37694 (15737-16172)
               

               
               114-516, gnl|mm7|chr13 (54495600-54496034)
               

               
               114-516, gnl|Mm7|chr13 (54496030-54495629)
               

               
               114-516, gnl|monDom2|scaffold_6 (17162250-17162664)
               

               
               114-516, gnl|oryCun1|scaffold_203910 (147655-148086)
               

               
               114-516, gnl|panTro1|chr4 (184234375-184234810)
               

               
               114-516, gnl|rheMac2|chr15 (698748-698313)
               

               
               114-516, gnl|rn3|chr17 (15262113-15261679)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-516, gnl|bosTau2|chr7 (21643259-21642857)
               

               
               114-516, gnl|canFam2|chr4 (39151366-39150933)
               

               
               114-516, gnl|dasNov1|scaffold_31231 (12728-13166)
               

               
               114-516, gnl|echTel1|scaffold_260388 (5162-4730)
               

               
               114-516, gnl|galGal2|chr3 (14967213-14966795)
               

               
               114-516, gnl|hg17|chr5 (176759770-176760205)
               

               
               114-516, gnl|Hg17|chr5 (176760200-176759799)
               

               
               114-516, gnl|loxAfr1|scaffold_37694 (15737-16172)
               

               
               114-516, gnl|mm7|chr13 (54495600-54496034)
               

               
               114-516, gnl|Mm7|chr13 (54496030-54495629)
               

               
               114-516, gnl|monDom2|scaffold_6 (17162250-17162664)
               

               
               114-516, gnl|oryCun1|scaffold_203910 (147655-148086)
               

               
               114-516, gnl|panTro1|chr4 (184234375-184234810)
               

               
               114-516, gnl|rheMac2|chr15 (698748-698313)
               

               
               114-516, gnl|rn3|chr17 (15262113-15261679)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cki (0.826173)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.826173)

	114-516, gnl\|bosTau2\|chr7 (21643259-21642857)
	114-516, gnl\|canFam2\|chr4 (39151366-39150933)
	114-516, gnl\|dasNov1\|scaffold_31231 (12728-13166)
	114-516, gnl\|echTel1\|scaffold_260388 (5162-4730)
	114-516, gnl\|galGal2\|chr3 (14967213-14966795)
	114-516, gnl\|hg17\|chr5 (176759770-176760205)
	114-516, gnl\|Hg17\|chr5 (176760200-176759799)
	114-516, gnl\|loxAfr1\|scaffold_37694 (15737-16172)
	114-516, gnl\|mm7\|chr13 (54495600-54496034)
	114-516, gnl\|Mm7\|chr13 (54496030-54495629)
	114-516, gnl\|monDom2\|scaffold_6 (17162250-17162664)
	114-516, gnl\|oryCun1\|scaffold_203910 (147655-148086)
	114-516, gnl\|panTro1\|chr4 (184234375-184234810)
	114-516, gnl\|rheMac2\|chr15 (698748-698313)
	114-516, gnl\|rn3\|chr17 (15262113-15261679)