Ss1.1-rcki08_n7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATGCCCCTTATTCAGCAATGCTTGAAAAGGATTGTTGGCCTGTTTTGCTTTCTTTATGA GTTAGGAGGGATGCATGGTGGTTTGGTTTTGGTGTTCTGAATGTAGGGAGGTCATCTTTG CAGGAGATGTAGTTGTTTCTGGACAGTGTGGTAATGGATTGTGCTTTCTTTGCAGCTCTT TCCGCTTCCAGTCCTTTGAGTCCTATGATTCCAGGCCTTGCCTTCCTGAGCACAATCCCT ACCGCCCTAGCTATAGCTACGACTATGACTTTGACCTGGGGCCCGACCGCAACGGTGGAT TTGGTGGTCAGTACAGTGATTGCCGGGACCCAGCCCGGGAACGGGGCTCCCTTGATGGCT TCATGAGGGGCCGCGGCCAGGGCCGATTCCAGGATCGGAGCAACCCCAGCACCTTTATGC GCAGTGACCCCTTCATGCCACCCGCAGCCTCCTCTGAGCCTCTTTCTACTCCATGGACGG AGATGAACTACGTGGGTGGGCGAGGCCTGGGAGGCCCCTCCCCCAGCAGACCTCCGCCTT CCCTCTTCTCCCAGTCCATGGCCCCTGACTTCAGCGTGATGGGCATGCAGGGGGCGGGTG GTTATGACAACTCTATGCCCTATGGATGTGGCCGGTCACAGACCCGGATAAGGGATCGGC CTAGGTGGAGAGGGTTTGATCGCTATGGCCCCGATAGCTTGGGCAGGAAACGGAAGCAGT TGCAGATTTACGACGAGCCAGACACCAAACAGGCCCGTGCTGACAGTGAAGGAGATTTTT CTGAAAACGATGATGGAGCTGGTGACTTCCGGTCAGGAGATGAATAATTCAGGGGCGAGG ACGAATTCTTCGACCCTGGGAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATGCCCCTTATTCAGCAATGCTTGAAAAGGATTGTTGGCCTGTTTTGCTTTCTTTATGA GTTAGGAGGGATGCATGGTGGTTTGGTTTTGGTGTTCTGAATGTAGGGAGGTCATCTTTG CAGGAGATGTAGTTGTTTCTGGACAGTGTGGTAATGGATTGTGCTTTCTTTGCAGCTCTT TCCGCTTCCAGTCCTTTGAGTCCTATGATTCCAGGCCTTGCCTTCCTGAGCACAATCCCT ACCGCCCTAGCTATAGCTACGACTATGACTTTGACCTGGGGCCCGACCGCAACGGTGGAT TTGGTGGTCAGTACAGTGATTGCCGGGACCCAGCCCGGGAACGGGGCTCCCTTGATGGCT TCATGAGGGGCCGCGGCCAGGGCCGATTCCAGGATCGGAGCAACCCCAGCACCTTTATGC GCAGTGACCCCTTCATGCCACCCGCAGCCTCCTCTGAGCCTCTTTCTACTCCATGGACGG AGATGAACTACGTGGGTGGGCGAGGCCTGGGAGGCCCCTCCCCCAGCAGACCTCCGCCTT CCCTCTTCTCCCAGTCCATGGCCCCTGACTTCAGCGTGATGGGCATGCAGGGGGCGGGTG GTTATGACAACTCTATGCCCTATGGATGTGGCCGGTCACAGACCCGGATAAGGGATCGGC CTAGGTGGAGAGGGTTTGATCGCTATGGCCCCGATAGCTTGGGCAGGAAACGGAAGCAGT TGCAGATTTACGACGAGCCAGACACCAAACAGGCCCGTGCTGACAGTGAAGGAGATTTTT CTGAAAACGATGATGGAGCTGGTGACTTCCGGTCAGGAGATGAATAATTCAGGGGCGAGG ACGAATTCTTCGACCCTGGGAAGC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 144-253, - strand, RNAz p=0.521141 | |
| 454-573, - strand, RNAz p=0.64145 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 144-253, - strand, RNAz p=0.521141 | |
| 454-573, - strand, RNAz p=0.64145 |
| Predicted microRNA(s): 2 entry(ies) | More info |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
| 496-603, - strand, RNAmicro p=0.985784 | |
| 501-591, + strand, RNAmicro p=0.959801 |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 496-603, - strand, RNAmicro p=0.985784 | |
| 501-591, + strand, RNAmicro p=0.959801 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 5-657, gnl|bosTau2|chr7 (6947643-6948295) | |
| 5-657, gnl|Hg17|chr19 (15345331-15344664) | |
| 5-657, gnl|Mm7|chr17 (30511713-30511036) | |
| 659-789, gnl|bosTau2|chr7 (6948826-6948956) | |
| 659-789, gnl|canFam2|chr20 (49808940-49808782) | |
| 659-789, gnl|canFam2|chr20 (49808799-49808931) | |
| 659-789, gnl|dasNov1|scaffold_39906 (5898-5769) | |
| 659-789, gnl|dasNov1|scaffold_39906 (5769-5901) | |
| 659-789, gnl|echTel1|scaffold_313974 (37178-37019) | |
| 659-789, gnl|echTel1|scaffold_313974 (37035-37167) | |
| 659-789, gnl|galGal2|chrUn (133428940-133428778) | |
| 659-789, gnl|hg17|chr19 (15344015-15344179) | |
| 659-789, gnl|Hg17|chr19 (15344159-15344029) | |
| 659-789, gnl|hg17|chr9 (11002450-11002584) | |
| 659-789, gnl|loxAfr1|scaffold_99576 (4818-4977) | |
| 659-789, gnl|loxAfr1|scaffold_99576 (4963-4833) | |
| 659-789, gnl|mm7|chr17 (30510488-30510649) | |
| 659-789, gnl|mm7|chr17 (30510632-30510500) | |
| 659-789, gnl|Mm7|chr17 (30510632-30510502) | |
| 659-789, gnl|monDom2|scaffold_100 (1101841-1102001) | |
| 659-789, gnl|monDom2|scaffold_100 (1101980-1101848) | |
| 659-789, gnl|oryCun1|scaffold_215274 (46574-46417) | |
| 659-789, gnl|oryCun1|scaffold_87601 (2010-2122) | |
| 659-789, gnl|panTro1|chr20 (16057390-16057554) | |
| 659-789, gnl|panTro1|chr20 (16057534-16057402) | |
| 659-789, gnl|rheMac2|chr15 (66071587-66071454) | |
| 659-789, gnl|rheMac2|chr19 (14970968-14971132) | |
| 659-789, gnl|rn3|chr7 (12884153-12884311) | |
| 659-789, gnl|rn3|chr7 (12884294-12884162) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-657, gnl|bosTau2|chr7 (6947643-6948295) | |
| 5-657, gnl|Hg17|chr19 (15345331-15344664) | |
| 5-657, gnl|Mm7|chr17 (30511713-30511036) | |
| 659-789, gnl|bosTau2|chr7 (6948826-6948956) | |
| 659-789, gnl|canFam2|chr20 (49808940-49808782) | |
| 659-789, gnl|canFam2|chr20 (49808799-49808931) | |
| 659-789, gnl|dasNov1|scaffold_39906 (5898-5769) | |
| 659-789, gnl|dasNov1|scaffold_39906 (5769-5901) | |
| 659-789, gnl|echTel1|scaffold_313974 (37178-37019) | |
| 659-789, gnl|echTel1|scaffold_313974 (37035-37167) | |
| 659-789, gnl|galGal2|chrUn (133428940-133428778) | |
| 659-789, gnl|hg17|chr19 (15344015-15344179) | |
| 659-789, gnl|Hg17|chr19 (15344159-15344029) | |
| 659-789, gnl|hg17|chr9 (11002450-11002584) | |
| 659-789, gnl|loxAfr1|scaffold_99576 (4818-4977) | |
| 659-789, gnl|loxAfr1|scaffold_99576 (4963-4833) | |
| 659-789, gnl|mm7|chr17 (30510488-30510649) | |
| 659-789, gnl|mm7|chr17 (30510632-30510500) | |
| 659-789, gnl|Mm7|chr17 (30510632-30510502) | |
| 659-789, gnl|monDom2|scaffold_100 (1101841-1102001) | |
| 659-789, gnl|monDom2|scaffold_100 (1101980-1101848) | |
| 659-789, gnl|oryCun1|scaffold_215274 (46574-46417) | |
| 659-789, gnl|oryCun1|scaffold_87601 (2010-2122) | |
| 659-789, gnl|panTro1|chr20 (16057390-16057554) | |
| 659-789, gnl|panTro1|chr20 (16057534-16057402) | |
| 659-789, gnl|rheMac2|chr15 (66071587-66071454) | |
| 659-789, gnl|rheMac2|chr19 (14970968-14971132) | |
| 659-789, gnl|rn3|chr7 (12884153-12884311) | |
| 659-789, gnl|rn3|chr7 (12884294-12884162) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| eep (0.122564) |