Non-Coding RNA Search

Ss1.1-rcki21_f1.5

Sequence:


               
               CTAACCTAGCCGACAGCCTGCAGCTGGAGAAGGAAGTGGTGCGGGTCTGGTTCTGCAACC
GGCGCCAGAAGGAGAAGCGCATGACGCCGCCCGGGATCCAACAGCAGACGCCCGACGACG
TCTACTCGCAGGTGGGCACCGTGAGCGCCGACACGCCGCCGCCGCACCACGGGCTCCAGA
CGAGCGTGCAGTGAAGGCCCGGGCGCCGCTGCGCGGAGCGGGCCCCGCCATCGCCGCCGC
TGTCACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGGGCCAGGCCACCCTAC
CCTCCGCGCAAAGACAGGCATGCCCGCCCTCGGAGGATCGGCGAGGGACGCACCGAGGAG
ACCAGGCTTGAAGTCCGTGGAAGGAGGGGCAAAATAAACAAACAAAGCATATAAATGCCC
AGACTGTTTTTTATACATATCTCACAAAACCGGAAAAGAAAGGGGGGGCGATCATGCGAT
CTCCTTTATACTGTGGTGGTGTTCCGTTTTTGTTTTTCTTTTAAAAGGAGGGTGAAGATG
ACTAGCTCACCAAAACTGCACTCTTGAGGTTCTTCCCACCACGAGAAGTCCTACACGGCG
ACGTTGGATAGCACCTAGCACCTGCCTTGTTCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAACCTAGCCGACAGCCTGCAGCTGGAGAAGGAAGTGGTGCGGGTCTGGTTCTGCAACC
GGCGCCAGAAGGAGAAGCGCATGACGCCGCCCGGGATCCAACAGCAGACGCCCGACGACG
TCTACTCGCAGGTGGGCACCGTGAGCGCCGACACGCCGCCGCCGCACCACGGGCTCCAGA
CGAGCGTGCAGTGAAGGCCCGGGCGCCGCTGCGCGGAGCGGGCCCCGCCATCGCCGCCGC
TGTCACCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACCGGGCCAGGCCACCCTAC
CCTCCGCGCAAAGACAGGCATGCCCGCCCTCGGAGGATCGGCGAGGGACGCACCGAGGAG
ACCAGGCTTGAAGTCCGTGGAAGGAGGGGCAAAATAAACAAACAAAGCATATAAATGCCC
AGACTGTTTTTTATACATATCTCACAAAACCGGAAAAGAAAGGGGGGGCGATCATGCGAT
CTCCTTTATACTGTGGTGGTGTTCCGTTTTTGTTTTTCTTTTAAAAGGAGGGTGAAGATG
ACTAGCTCACCAAAACTGCACTCTTGAGGTTCTTCCCACCACGAGAAGTCCTACACGGCG
ACGTTGGATAGCACCTAGCACCTGCCTTGTTCTCTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-311, gnl|bosTau2|chr11 (6551231-6551526)
               

               
               3-311, gnl|Hg17|chr2 (104931798-104932203)
               

               
               3-311, gnl|Mm7|chr1 (42938833-42939284)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-311, gnl|bosTau2|chr11 (6551231-6551526)
               

               
               3-311, gnl|Hg17|chr2 (104931798-104932203)
               

               
               3-311, gnl|Mm7|chr1 (42938833-42939284)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cki (0.330469)
               

               
               ecc (0.23007)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               ecc (0.23007)

	3-311, gnl\|bosTau2\|chr11 (6551231-6551526)
	3-311, gnl\|Hg17\|chr2 (104931798-104932203)
	3-311, gnl\|Mm7\|chr1 (42938833-42939284)