Ss1.1-rcki21_h15.5
|
GCTGCAAACAGGGTTCAGATTTATTTGGGGAGCCCGCGAACATGGAGTGGGAGGTCCCTT
CCCCCACCAGCAACTGAGTGTTCCTGTCACCAGGCAGACAGAGAAGGGCTATGCGTGCTG
GGTCCCCCAGGCTTTGTCCCCACCCCCACCCCCCAAGCAGTAGGGAGGCTGATACGGAGG
GGCGTTGTCCTAGTCTGGGGTGACCCACACCGCCTCTCCTAGCCAGGACAGGAAGTGTGA
GAGCACAGAGAGGAAGCAGCTTCACAGGGAGTGATCCTGAGCCATTTACTGGACTTTTCA
AAAGGCTCCTGAGAACAGCAAGAGGGCCAGGGAGGAGCCGGCTGTGCAGGCTTCTCTCCT
CGGGCCTCGGCTGCCTCTGAATGAAAGAGCCAGTGGGCAGGGCAAAGGCAGAGTCATTCT
GTGGCACGAAGACGTCCCAGATCAGGAAGTGCCACTGACTGGGGGCTTGTGGGGCAGGTG
CTCAGAGCCCCTCACAGCACCTTGCCTGGGTTCATGAGGCCGCGGGGATCCAGTGTGGCC
TTGAACTGCCGCATGACCTCCATGCCCACGGCACCCACCTCCTCCTGCAGCAGCTGCCGT
TTGCCCAGCCCAATGCCGTGTTCCCCAGTACAGGTGCCATGGAATGCCAGTGCGTGCCTG
GCCAGCTGTTTTGAAAAGGCCATGACCTTGAGGAGCTCCTCAGGGTCCTCCGGGTCTGCC
AGCAGGATGCAGTGGAAGTTGCCATCGCCCACATGCCCAACGATGGTTCCTGTGAGTCCA
GAGGCCTTCAGGTTCTCCTTGGTCTGCACCAGGATCTCCGGCAGCCGGGAGATGGGCACG
CACACGTCGGTGGAATAGCCCTTGCAGCCGGGCCGCAGGGCTAGGGCTGCGTACCAGGCG
TTGTGCCGCGCCGCCCAGAGCCGGCTGCGCTCCTCGGCCTCCTTGGCCCAGGAGAAGTGG
GATCCTCCATTGTGCCGGGTGATCTCTTCTGTGCGCTGCACCTGCTCTGCCAGCGCCTGC
TCCGAGCCATGGAACTCGAGGAAGAGTGTGGGCGCCACGCAGCAGTTCAGCTTGCTGTGC
CTGTTGCATGCG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTGCAAACAGGGTTCAGATTTATTTGGGGAGCCCGCGAACATGGAGTGGGAGGTCCCTT
CCCCCACCAGCAACTGAGTGTTCCTGTCACCAGGCAGACAGAGAAGGGCTATGCGTGCTG
GGTCCCCCAGGCTTTGTCCCCACCCCCACCCCCCAAGCAGTAGGGAGGCTGATACGGAGG
GGCGTTGTCCTAGTCTGGGGTGACCCACACCGCCTCTCCTAGCCAGGACAGGAAGTGTGA
GAGCACAGAGAGGAAGCAGCTTCACAGGGAGTGATCCTGAGCCATTTACTGGACTTTTCA
AAAGGCTCCTGAGAACAGCAAGAGGGCCAGGGAGGAGCCGGCTGTGCAGGCTTCTCTCCT
CGGGCCTCGGCTGCCTCTGAATGAAAGAGCCAGTGGGCAGGGCAAAGGCAGAGTCATTCT
GTGGCACGAAGACGTCCCAGATCAGGAAGTGCCACTGACTGGGGGCTTGTGGGGCAGGTG
CTCAGAGCCCCTCACAGCACCTTGCCTGGGTTCATGAGGCCGCGGGGATCCAGTGTGGCC
TTGAACTGCCGCATGACCTCCATGCCCACGGCACCCACCTCCTCCTGCAGCAGCTGCCGT
TTGCCCAGCCCAATGCCGTGTTCCCCAGTACAGGTGCCATGGAATGCCAGTGCGTGCCTG
GCCAGCTGTTTTGAAAAGGCCATGACCTTGAGGAGCTCCTCAGGGTCCTCCGGGTCTGCC
AGCAGGATGCAGTGGAAGTTGCCATCGCCCACATGCCCAACGATGGTTCCTGTGAGTCCA
GAGGCCTTCAGGTTCTCCTTGGTCTGCACCAGGATCTCCGGCAGCCGGGAGATGGGCACG
CACACGTCGGTGGAATAGCCCTTGCAGCCGGGCCGCAGGGCTAGGGCTGCGTACCAGGCG
TTGTGCCGCGCCGCCCAGAGCCGGCTGCGCTCCTCGGCCTCCTTGGCCCAGGAGAAGTGG
GATCCTCCATTGTGCCGGGTGATCTCTTCTGTGCGCTGCACCTGCTCTGCCAGCGCCTGC
TCCGAGCCATGGAACTCGAGGAAGAGTGTGGGCGCCACGCAGCAGTTCAGCTTGCTGTGC
CTGTTGCATGCG
|
|
gi|61825591|ref|XP_587411.1| |
Protein identifier
|
gi|61825591|ref|XP_587411.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
38-358, gnl|bosTau2|chr18 (1371823-1372129) |
|
38-358, gnl|Hg17|chr16 (73703317-73703602) |
|
38-358, gnl|Mm7|chr8 (110226616-110226877) |
| |
|
437-661, gnl|bosTau2|chr18 (1372171-1372395) |
|
437-661, gnl|Hg17|chr16 (73703702-73703924) |
|
437-661, gnl|Mm7|chr8 (110227013-110227239) |
| |
|
860-992, gnl|bosTau2|chr18 (1373245-1373377) |
|
860-992, gnl|canFam2|chr5 (78595005-78594867) |
|
860-992, gnl|danRer3|chrNA (105944855-105944992) |
|
860-992, gnl|echTel1|scaffold_319347 (2840-2703) |
|
860-992, gnl|hg17|chr16 (73704928-73705067) |
|
860-992, gnl|Hg17|chr16 (73704933-73705065) |
|
860-992, gnl|mm7|chr8 (110228138-110228277) |
|
860-992, gnl|Mm7|chr8 (110228143-110228275) |
|
860-992, gnl|monDom2|scaffold_63 (10696073-10696212) |
|
860-992, gnl|oryCun1|scaffold_172761 (40403-40262) |
|
860-992, gnl|panTro1|chr18 (68098396-68098535) |
|
860-992, gnl|rheMac2|chr20 (73226159-73226298) |
|
860-992, gnl|rn3|chr19 (41549282-41549421) |
|
860-992, gnl|tetNig1|chrUn_random (96517838-96517974) |
|
860-992, gnl|xenTro1|scaffold_264 (820963-821102) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
38-358, gnl|bosTau2|chr18 (1371823-1372129) |
|
38-358, gnl|Hg17|chr16 (73703317-73703602) |
|
38-358, gnl|Mm7|chr8 (110226616-110226877) |
| |
|
437-661, gnl|bosTau2|chr18 (1372171-1372395) |
|
437-661, gnl|Hg17|chr16 (73703702-73703924) |
|
437-661, gnl|Mm7|chr8 (110227013-110227239) |
| |
|
860-992, gnl|bosTau2|chr18 (1373245-1373377) |
|
860-992, gnl|canFam2|chr5 (78595005-78594867) |
|
860-992, gnl|danRer3|chrNA (105944855-105944992) |
|
860-992, gnl|echTel1|scaffold_319347 (2840-2703) |
|
860-992, gnl|hg17|chr16 (73704928-73705067) |
|
860-992, gnl|Hg17|chr16 (73704933-73705065) |
|
860-992, gnl|mm7|chr8 (110228138-110228277) |
|
860-992, gnl|Mm7|chr8 (110228143-110228275) |
|
860-992, gnl|monDom2|scaffold_63 (10696073-10696212) |
|
860-992, gnl|oryCun1|scaffold_172761 (40403-40262) |
|
860-992, gnl|panTro1|chr18 (68098396-68098535) |
|
860-992, gnl|rheMac2|chr20 (73226159-73226298) |
|
860-992, gnl|rn3|chr19 (41549282-41549421) |
|
860-992, gnl|tetNig1|chrUn_random (96517838-96517974) |
|
860-992, gnl|xenTro1|scaffold_264 (820963-821102) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
cki (0.165235) |
|
eli (0.151814) |
|
pty (0.142714) |
|
cst (0.140036) |
|
cbr (0.127975) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
cki (0.165235) |
|
eli (0.151814) |
|
pty (0.142714) |
|
cst (0.140036) |
|
cbr (0.127975) |