Ss1.1-rcki22_c4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGATTACAGATGTCTTAATAATGAACAAATGTGGCAGGAAAAAATATATTAAGACAAA TCTAAGACAAATGACCATGGAAACAATTGACTCTCAGCAGGATGGAAGTATACCAGATTC TGTGGCAGAGAGCGAATCTGCTCATATGCAGATGCAGACTGGTCAAAATTCAGTCCCCAC TTTAGCTCAGGTTTCTGTAGCTGGATCAGGCACCGGAAGAGGCTCCCCAGCTGTAACTCT AGTGCAGTTACCTTCAGGCCAAACTGTCCATGTCCAGGGAGTAATTCCGACACCACAGCC ATCGATTATTCAGTCACCACAAATACAAACTGTTCAGGTAGCAACAATTGCAGAGACAGA TGAGTCTGCAGAATCAGAAGGTGTAATTGACTCTCATAAACGTAGAGAAATCCTGTCACG AAGACCTTCTTATAGAAAAATACTGAATGAACTTTCCTCTGATGTGCCTGGTGTTCCCAA GATTGAAGAAGAAAAATCAGAGGAAGAAGGAACGCCACCTAATATCGCTGCCATGGCAGT GCCGACTAGCATATATCAGACTAGCACGGGGCAATACAGTATGTATGCTGCAACTCCCTA TGATGTAGTGCTAGCTTTAAGTCTCTCTGGTTTCCTTGAAGCCACTTGGGTTTTGGCACT AAACAGTCCCATCTTAAAATGCATCACAATACCTAAACTGTGTAAAAGAGTAAGAGATTT GTACTGACATTTGTCATATACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGATTACAGATGTCTTAATAATGAACAAATGTGGCAGGAAAAAATATATTAAGACAAA TCTAAGACAAATGACCATGGAAACAATTGACTCTCAGCAGGATGGAAGTATACCAGATTC TGTGGCAGAGAGCGAATCTGCTCATATGCAGATGCAGACTGGTCAAAATTCAGTCCCCAC TTTAGCTCAGGTTTCTGTAGCTGGATCAGGCACCGGAAGAGGCTCCCCAGCTGTAACTCT AGTGCAGTTACCTTCAGGCCAAACTGTCCATGTCCAGGGAGTAATTCCGACACCACAGCC ATCGATTATTCAGTCACCACAAATACAAACTGTTCAGGTAGCAACAATTGCAGAGACAGA TGAGTCTGCAGAATCAGAAGGTGTAATTGACTCTCATAAACGTAGAGAAATCCTGTCACG AAGACCTTCTTATAGAAAAATACTGAATGAACTTTCCTCTGATGTGCCTGGTGTTCCCAA GATTGAAGAAGAAAAATCAGAGGAAGAAGGAACGCCACCTAATATCGCTGCCATGGCAGT GCCGACTAGCATATATCAGACTAGCACGGGGCAATACAGTATGTATGCTGCAACTCCCTA TGATGTAGTGCTAGCTTTAAGTCTCTCTGGTTTCCTTGAAGCCACTTGGGTTTTGGCACT AAACAGTCCCATCTTAAAATGCATCACAATACCTAAACTGTGTAAAAGAGTAAGAGATTT GTACTGACATTTGTCATATACTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 430-627, - strand, RNAz p=0.940166 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 430-627, - strand, RNAz p=0.940166 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 188-339, gnl|bosTau2|chr13 (8885608-8885759) | |
| 188-339, gnl|Hg17|chr10 (35504784-35504935) | |
| 188-339, gnl|Mm7|chr18 (3465239-3465088) | |
| 430-711, gnl|bosTau2|chr13 (8889059-8889339) | |
| 430-711, gnl|canFam2|chr2 (4784317-4784130) | |
| 430-711, gnl|danRer3|chr1 (29148806-29148638) | |
| 430-711, gnl|dasNov1|scaffold_8335 (8838-8651) | |
| 430-711, gnl|echTel1|scaffold_314850 (9428-9240) | |
| 430-711, gnl|fr1|chrUn (34622430-34622264) | |
| 430-711, gnl|galGal2|chr2 (12365791-12365604) | |
| 430-711, gnl|hg17|chr10 (35508046-35508233) | |
| 430-711, gnl|Hg17|chr10 (35508062-35508343) | |
| 430-711, gnl|loxAfr1|scaffold_11468 (33340-33154) | |
| 430-711, gnl|mm7|chr18 (3461134-3460947) | |
| 430-711, gnl|Mm7|chr18 (3461116-3460838) | |
| 430-711, gnl|monDom2|scaffold_7 (33043418-33043230) | |
| 430-711, gnl|oryCun1|scaffold_205313 (37356-37169) | |
| 430-711, gnl|panTro1|chr8 (35987064-35987251) | |
| 430-711, gnl|rheMac2|chr9 (35397883-35398070) | |
| 430-711, gnl|rn3|chr17 (62818391-62818578) | |
| 430-711, gnl|tetNig1|chr3 (1834623-1834475) | |
| 430-711, gnl|xenTro1|scaffold_34 (641795-641961) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 188-339, gnl|bosTau2|chr13 (8885608-8885759) | |
| 188-339, gnl|Hg17|chr10 (35504784-35504935) | |
| 188-339, gnl|Mm7|chr18 (3465239-3465088) | |
| 430-711, gnl|bosTau2|chr13 (8889059-8889339) | |
| 430-711, gnl|canFam2|chr2 (4784317-4784130) | |
| 430-711, gnl|danRer3|chr1 (29148806-29148638) | |
| 430-711, gnl|dasNov1|scaffold_8335 (8838-8651) | |
| 430-711, gnl|echTel1|scaffold_314850 (9428-9240) | |
| 430-711, gnl|fr1|chrUn (34622430-34622264) | |
| 430-711, gnl|galGal2|chr2 (12365791-12365604) | |
| 430-711, gnl|hg17|chr10 (35508046-35508233) | |
| 430-711, gnl|Hg17|chr10 (35508062-35508343) | |
| 430-711, gnl|loxAfr1|scaffold_11468 (33340-33154) | |
| 430-711, gnl|mm7|chr18 (3461134-3460947) | |
| 430-711, gnl|Mm7|chr18 (3461116-3460838) | |
| 430-711, gnl|monDom2|scaffold_7 (33043418-33043230) | |
| 430-711, gnl|oryCun1|scaffold_205313 (37356-37169) | |
| 430-711, gnl|panTro1|chr8 (35987064-35987251) | |
| 430-711, gnl|rheMac2|chr9 (35397883-35398070) | |
| 430-711, gnl|rn3|chr17 (62818391-62818578) | |
| 430-711, gnl|tetNig1|chr3 (1834623-1834475) | |
| 430-711, gnl|xenTro1|scaffold_34 (641795-641961) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| tes (0.207814) | |
| hea (0.204499) | |
| ton (0.1755) | |
| cki (0.165235) | |
| cag (0.151194) | |
| eep (0.122564) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| hea (0.204499) | |
| ton (0.1755) | |
| cki (0.165235) | |
| cag (0.151194) | |
| eep (0.122564) | |
| med (0.116252) | |
| jej (0.0989218) |