Non-Coding RNA Search

Ss1.1-rcki22_e17.5

Sequence:


               
               AGCCCGGGCGGCAGCAGCAGCTGCGGCGGCTGCAGGGGCAGATTCCCAGCGTTGGGGCGA
AGGGGAGCAGGGGCTGCCTTCTGCGAATCCTAGAACGACTGAATCAGAGGATTGGAAAGA
ACCCTTTCTGAGGTCCATTTTCCTGCTAGTAACCATCCACCGTGCACAGAAAGAGGAACT
GGCGAGAGGTCTGTTTGCCTGGACCCATCAACAGCCAGGAGACTAACCAACCACACTGAA
AATGTTCTGGGATTTGTGGGGGAGGGGTTGGGATGTAGATGTTTGAAGCAAATGTGTATA
AATAAATGAATTGCTGATAACTTAGTTTTTGACCTGGAGACTGGTAGATTAAAGAAGCTC
CATGTTTCTGCTTCCTGGAGTTGGAGGTTTCTATAGGCACTTTATTTCTCCACTTTGAAA
ATCTTGGGCTTGGCCCCAATCTGGGGCTGCCCGGTCCCGTTTCGATTACCAATTTAAATC
TATGGCTTGAACCTTTACGTTGAAAAAACCATATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCGGGCGGCAGCAGCAGCTGCGGCGGCTGCAGGGGCAGATTCCCAGCGTTGGGGCGA
AGGGGAGCAGGGGCTGCCTTCTGCGAATCCTAGAACGACTGAATCAGAGGATTGGAAAGA
ACCCTTTCTGAGGTCCATTTTCCTGCTAGTAACCATCCACCGTGCACAGAAAGAGGAACT
GGCGAGAGGTCTGTTTGCCTGGACCCATCAACAGCCAGGAGACTAACCAACCACACTGAA
AATGTTCTGGGATTTGTGGGGGAGGGGTTGGGATGTAGATGTTTGAAGCAAATGTGTATA
AATAAATGAATTGCTGATAACTTAGTTTTTGACCTGGAGACTGGTAGATTAAAGAAGCTC
CATGTTTCTGCTTCCTGGAGTTGGAGGTTTCTATAGGCACTTTATTTCTCCACTTTGAAA
ATCTTGGGCTTGGCCCCAATCTGGGGCTGCCCGGTCCCGTTTCGATTACCAATTTAAATC
TATGGCTTGAACCTTTACGTTGAAAAAACCATATCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               353-468, + strand, RNAz p=0.833224

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-468, + strand, RNAz p=0.833224

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               333-438, + strand, RNAmicro p=0.900771

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               333-438, + strand, RNAmicro p=0.900771

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               85-506, gnl|bosTau2|chr4 (37153956-37153533)
               

               
               85-506, gnl|canFam2|chr14 (43228740-43229570)
               

               
               85-506, gnl|dasNov1|scaffold_37734 (4050-3244)
               

               
               85-506, gnl|echTel1|scaffold_325315 (47434-48288)
               

               
               85-506, gnl|hg17|chr7 (26912151-26912990)
               

               
               85-506, gnl|Hg17|chr7 (26912530-26912960)
               

               
               85-506, gnl|mm7|chr6 (52124689-52125539)
               

               
               85-506, gnl|Mm7|chr6 (52125092-52125512)
               

               
               85-506, gnl|monDom2|scaffold_57 (984291-983476)
               

               
               85-506, gnl|oryCun1|scaffold_200437 (210500-209671)
               

               
               85-506, gnl|panTro1|chr6 (28042202-28043040)
               

               
               85-506, gnl|rheMac2|chr3 (99126754-99125907)
               

               
               85-506, gnl|rn3|chr4 (80739108-80739930)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-506, gnl|bosTau2|chr4 (37153956-37153533)
               

               
               85-506, gnl|canFam2|chr14 (43228740-43229570)
               

               
               85-506, gnl|dasNov1|scaffold_37734 (4050-3244)
               

               
               85-506, gnl|echTel1|scaffold_325315 (47434-48288)
               

               
               85-506, gnl|hg17|chr7 (26912151-26912990)
               

               
               85-506, gnl|Hg17|chr7 (26912530-26912960)
               

               
               85-506, gnl|mm7|chr6 (52124689-52125539)
               

               
               85-506, gnl|Mm7|chr6 (52125092-52125512)
               

               
               85-506, gnl|monDom2|scaffold_57 (984291-983476)
               

               
               85-506, gnl|oryCun1|scaffold_200437 (210500-209671)
               

               
               85-506, gnl|panTro1|chr6 (28042202-28043040)
               

               
               85-506, gnl|rheMac2|chr3 (99126754-99125907)
               

               
               85-506, gnl|rn3|chr4 (80739108-80739930)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

	85-506, gnl\|bosTau2\|chr4 (37153956-37153533)
	85-506, gnl\|canFam2\|chr14 (43228740-43229570)
	85-506, gnl\|dasNov1\|scaffold_37734 (4050-3244)
	85-506, gnl\|echTel1\|scaffold_325315 (47434-48288)
	85-506, gnl\|hg17\|chr7 (26912151-26912990)
	85-506, gnl\|Hg17\|chr7 (26912530-26912960)
	85-506, gnl\|mm7\|chr6 (52124689-52125539)
	85-506, gnl\|Mm7\|chr6 (52125092-52125512)
	85-506, gnl\|monDom2\|scaffold_57 (984291-983476)
	85-506, gnl\|oryCun1\|scaffold_200437 (210500-209671)
	85-506, gnl\|panTro1\|chr6 (28042202-28043040)
	85-506, gnl\|rheMac2\|chr3 (99126754-99125907)
	85-506, gnl\|rn3\|chr4 (80739108-80739930)

	elu (0.385356)
	sag (0.182715)
	cki (0.165235)
	pla (0.133672)
	cov (0.132153)