Non-Coding RNA Search

Ss1.1-rcki22_j22.5

Sequence:


               
               TTTTTTTTCCCTTTTAGGGCTGCACCTGCGGCATATGGAGGTTCCCAGGCTAGGGGTCAA
ACCGGAGCTATAGCTGCCAGCCTACTCCCCACAGCAATGTGGGATCCAAGCCGCACCTGC
GACCTACACCGCAGGTCACCGCCACGCTGGCTCCTTAACCCACTGAGCGAGGCCAGGGAT
CGAACCTGCAACCTCATGGTTACTGGTCAGGTTCGTTTCTGCTGTGCCACAATGGGAACC
CCAAAGTCATTTTAACTTTTATGTACTTTGACCCACTCACTCTCCTTTAAGTATTTGATA
TTAGGAGAGTGTTGAAATAAACCATAGCATATCCAAATCATGGAATCTTACTCTGCCATT
AAAATTATGTTTACAAAGAGGATTTTTATAGATAAGAGAAAAATAACTTCAATATAGTGT
TACATTGAGAAAGCTGGGTGTAAGACTTTATATATAGTAATATCTGAGCTGTATTCAAAA
ATACATAGGAGTTCCCTTGTGGCACAGCAGGTCAAGGATCCAGTGTTGTCACTGCAGTGG
CTCAGATCACTGCTGTGGCACAGGTTCAGTCCCTGGCCCAGGAATTTCCACATGCTGCAG
GTATGGCCAAAAAAAAAAAAAAAAGTAGGAAGAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTCCCTTTTAGGGCTGCACCTGCGGCATATGGAGGTTCCCAGGCTAGGGGTCAA
ACCGGAGCTATAGCTGCCAGCCTACTCCCCACAGCAATGTGGGATCCAAGCCGCACCTGC
GACCTACACCGCAGGTCACCGCCACGCTGGCTCCTTAACCCACTGAGCGAGGCCAGGGAT
CGAACCTGCAACCTCATGGTTACTGGTCAGGTTCGTTTCTGCTGTGCCACAATGGGAACC
CCAAAGTCATTTTAACTTTTATGTACTTTGACCCACTCACTCTCCTTTAAGTATTTGATA
TTAGGAGAGTGTTGAAATAAACCATAGCATATCCAAATCATGGAATCTTACTCTGCCATT
AAAATTATGTTTACAAAGAGGATTTTTATAGATAAGAGAAAAATAACTTCAATATAGTGT
TACATTGAGAAAGCTGGGTGTAAGACTTTATATATAGTAATATCTGAGCTGTATTCAAAA
ATACATAGGAGTTCCCTTGTGGCACAGCAGGTCAAGGATCCAGTGTTGTCACTGCAGTGG
CTCAGATCACTGCTGTGGCACAGGTTCAGTCCCTGGCCCAGGAATTTCCACATGCTGCAG
GTATGGCCAAAAAAAAAAAAAAAAGTAGGAAGAGAC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               292-490, gnl|bosTau2|chr5 (20560481-20560677)
               

               
               292-490, gnl|Hg17|chr12 (51838118-51837924)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               292-490, gnl|bosTau2|chr5 (20560481-20560677)
               

               
               292-490, gnl|Hg17|chr12 (51838118-51837924)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cmu (0.55918)
               

               
               cte (0.29274)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               cte (0.29274)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	292-490, gnl\|bosTau2\|chr5 (20560481-20560677)
	292-490, gnl\|Hg17\|chr12 (51838118-51837924)

	cmu (0.55918)
	cte (0.29274)
	cki (0.165235)
	lun (0.150489)
	lyg (0.133103)
	sug (0.127291)
	ese (0.126502)
	jca (0.11396)